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Protein

Uncharacterized HTH-type transcriptional regulator YdeS

Gene

ydeS

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi34 – 5320H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Repressor

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU05320-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YdeS
Gene namesi
Name:ydeS
Ordered Locus Names:BSU05320
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 198198Uncharacterized HTH-type transcriptional regulator YdeSPRO_0000360708Add
BLAST

Proteomic databases

PaxDbiP96676.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100002988.

Structurei

3D structure databases

ProteinModelPortaliP96676.
SMRiP96676. Positions 9-190.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini11 – 7161HTH tetR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH tetR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108JGH. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000266637.
InParanoidiP96676.
OMAiAAVIMDS.
PhylomeDBiP96676.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF16859. TetR_C_11. 1 hit.
PF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P96676-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQSKRGRPRD EGTHKAILSA AYDLLLEKGF DAVTVDKIAE RAKVSKATIY
60 70 80 90 100
KWWSNKAAVI MDSFLSTATD RLPVPDTGSS VQDIVTHATN LARFLTSREG
110 120 130 140 150
TVIKELIGAG QLDEKLAEEY RTRFFQPRRL QAKGLLEKGI QKGELRENLD
160 170 180 190
IEVSIDLIYG PIFYRLLITG DEVNDSYVRD LVMNAFKGVQ ATSATESM
Length:198
Mass (Da):22,143
Last modified:May 1, 1997 - v1
Checksum:iB9E82233859CB3FC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA. Translation: BAA19366.1.
AL009126 Genomic DNA. Translation: CAB12339.1.
PIRiE69779.
RefSeqiNP_388413.1. NC_000964.3.
WP_003244147.1. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB12339; CAB12339; BSU05320.
GeneIDi938083.
KEGGibsu:BSU05320.
PATRICi18972664. VBIBacSub10457_0553.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA. Translation: BAA19366.1.
AL009126 Genomic DNA. Translation: CAB12339.1.
PIRiE69779.
RefSeqiNP_388413.1. NC_000964.3.
WP_003244147.1. NC_000964.3.

3D structure databases

ProteinModelPortaliP96676.
SMRiP96676. Positions 9-190.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100002988.

Proteomic databases

PaxDbiP96676.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12339; CAB12339; BSU05320.
GeneIDi938083.
KEGGibsu:BSU05320.
PATRICi18972664. VBIBacSub10457_0553.

Phylogenomic databases

eggNOGiENOG4108JGH. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000266637.
InParanoidiP96676.
OMAiAAVIMDS.
PhylomeDBiP96676.

Enzyme and pathway databases

BioCyciBSUB:BSU05320-MONOMER.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF16859. TetR_C_11. 1 hit.
PF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDES_BACSU
AccessioniPrimary (citable) accession number: P96676
Secondary accession number(s): Q797H4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: May 1, 1997
Last modified: September 7, 2016
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.