Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized HTH-type transcriptional regulator YdeL

Gene

ydeL

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Cofactori

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi41 – 6020H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Aminotransferase, Transferase

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Pyridoxal phosphate

Enzyme and pathway databases

BioCyciBSUB:BSU05240-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YdeL
Gene namesi
Name:ydeL
Ordered Locus Names:BSU05240
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 463463Uncharacterized HTH-type transcriptional regulator YdeLPRO_0000360696Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei308 – 3081N6-(pyridoxal phosphate)lysineBy similarity

Proteomic databases

PaxDbiP96669.

Interactioni

Protein-protein interaction databases

IntActiP96669. 17 interactions.
STRINGi224308.Bsubs1_010100002948.

Structurei

3D structure databases

ProteinModelPortaliP96669.
SMRiP96669. Positions 10-81, 102-462.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini13 – 8169HTH gntR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.Curated
Contains 1 HTH gntR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105C1I. Bacteria.
COG1167. LUCA.
HOGENOMiHOG000223052.
InParanoidiP96669.
KOiK00375.
OMAiHVRAMRK.
OrthoDBiEOG689HSF.
PhylomeDBiP96669.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.40.640.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
PF00392. GntR. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF53383. SSF53383. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P96669-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDITPFLNRT LDIPLYQQLY RYFKENMHRG RIQKGMKLPS KRLLANQLSI
60 70 80 90 100
SQTTVERAYE QLAAEGYIVS KPRSGWFADY HDSDFAYDRM PSTTPIQQEA
110 120 130 140 150
EENKQWIDFH YGNVDSSYFP FSAWRKSMVN SLDQYGHELY RPGHVLGEFE
160 170 180 190 200
LRTLIAEYLY QSRGVHCGPE QVIIGAGNPI LLQILCQVFE PNISIGYEDP
210 220 230 240 250
GYPRARKIFE ANRMNIVPIP VDDEGICIQK IKEQQPNLVY VTPSHQFTLG
260 270 280 290 300
TIMTINRRIQ LLKWAAENQS FIIEDDYDGE FRYTGQPVPS LQGLDQHNRV
310 320 330 340 350
IYMGTFSKSL LPSLRISYMI LPSPLLKKGH EITSLYKQTV SCHSQLTLAE
360 370 380 390 400
FIKNGEWQKH INRMRKLYRK KRAIVLEAVQ RELGEHVRIR GENSGLRILL
410 420 430 440 450
DVYLPFGEKE LIEKAKKHGV KIYPVSLSYQ HHPPTKTVSL GFAGVSESDI
460
REGIKKLKAA WKI
Length:463
Mass (Da):53,525
Last modified:May 1, 1997 - v1
Checksum:iDBB7BA2C5D2EF8B7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA. Translation: BAA19359.1.
AL009126 Genomic DNA. Translation: CAB12331.1.
PIRiF69778.
RefSeqiNP_388405.1. NC_000964.3.
WP_003234223.1. NZ_JNCM01000031.1.

Genome annotation databases

EnsemblBacteriaiCAB12331; CAB12331; BSU05240.
GeneIDi939904.
KEGGibsu:BSU05240.
PATRICi18972648. VBIBacSub10457_0545.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA. Translation: BAA19359.1.
AL009126 Genomic DNA. Translation: CAB12331.1.
PIRiF69778.
RefSeqiNP_388405.1. NC_000964.3.
WP_003234223.1. NZ_JNCM01000031.1.

3D structure databases

ProteinModelPortaliP96669.
SMRiP96669. Positions 10-81, 102-462.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP96669. 17 interactions.
STRINGi224308.Bsubs1_010100002948.

Proteomic databases

PaxDbiP96669.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12331; CAB12331; BSU05240.
GeneIDi939904.
KEGGibsu:BSU05240.
PATRICi18972648. VBIBacSub10457_0545.

Phylogenomic databases

eggNOGiENOG4105C1I. Bacteria.
COG1167. LUCA.
HOGENOMiHOG000223052.
InParanoidiP96669.
KOiK00375.
OMAiHVRAMRK.
OrthoDBiEOG689HSF.
PhylomeDBiP96669.

Enzyme and pathway databases

BioCyciBSUB:BSU05240-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.40.640.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
PF00392. GntR. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF53383. SSF53383. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A 148 kbp sequence of the region between 35 and 47 degree of the Bacillus subtilis genome."
    Kasahara Y., Nakai S., Lee S., Sadaie Y., Ogasawara N.
    Submitted (MAR-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  3. "GabR, a member of a novel protein family, regulates the utilization of gamma-aminobutyrate in Bacillus subtilis."
    Belitsky B.R., Sonenshein A.L.
    Mol. Microbiol. 45:569-583(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiYDEL_BACSU
AccessioniPrimary (citable) accession number: P96669
Secondary accession number(s): Q797H9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: May 1, 1997
Last modified: February 17, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.