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Protein

Uncharacterized HTH-type transcriptional regulator YdeC

Gene

ydeC

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi208 – 229H-T-H motifPROSITE-ProRule annotationAdd BLAST22
DNA bindingi256 – 279H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciBSUB:BSU05150-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YdeC
Gene namesi
Name:ydeC
Ordered Locus Names:BSU05150
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003650201 – 291Uncharacterized HTH-type transcriptional regulator YdeCAdd BLAST291

Proteomic databases

PaxDbiP96660.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100002903.

Structurei

3D structure databases

ProteinModelPortaliP96660.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini191 – 289HTH araC/xylS-typePROSITE-ProRule annotationAdd BLAST99

Phylogenomic databases

eggNOGiENOG4108MCI. Bacteria.
COG2207. LUCA.
HOGENOMiHOG000050345.
InParanoidiP96660.
OMAiYICLNVS.
PhylomeDBiP96660.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiView protein in InterPro
IPR003313. AraC-bd.
IPR009057. Homeobox-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR014710. RmlC-like_jellyroll.
IPR020449. Tscrpt_reg_HTH_AraC-type.
PfamiView protein in Pfam
PF02311. AraC_binding. 1 hit.
PF12833. HTH_18. 1 hit.
PRINTSiPR00032. HTHARAC.
SMARTiView protein in SMART
SM00342. HTH_ARAC. 1 hit.
SUPFAMiSSF46689. SSF46689. 2 hits.
PROSITEiView protein in PROSITE
PS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.

Sequencei

Sequence statusi: Complete.

P96660-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNFVIDQNL KELTEHRTVE LPVACYKTTI NQNINGYIPL HWHDEIQFVL
60 70 80 90 100
ILKGIALFQI NEEKIEVHEG DGLFINSGYL HMAEEKEGSD CTYICLNVSP
110 120 130 140 150
HFVLSQELYS SYVQPYMFST NLPYLFLAGN QQWAKNILDA VKKINQLIQQ
160 170 180 190 200
KTSLYEIDIT MQLTLMWKNL VVNGFQLEYD QSEMIKSHRM KQMLNWIHLH
210 220 230 240 250
YVEKITLEDI AKAGQLSRSE CCRYFKRMLN KTPLRYVMDY RIQKSLLLLQ
260 270 280 290
HPESNVTEVS YQVGFNSTSY FISKFQQAMN MTPLSYKKMN S
Length:291
Mass (Da):34,226
Last modified:May 1, 1997 - v1
Checksum:i0333937D133F6B9E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA. Translation: BAA19350.1.
AL009126 Genomic DNA. Translation: CAB12322.1.
PIRiE69777.
RefSeqiNP_388396.1. NC_000964.3.
WP_003234240.1. NZ_JNCM01000031.1.

Genome annotation databases

EnsemblBacteriaiCAB12322; CAB12322; BSU05150.
GeneIDi938103.
KEGGibsu:BSU05150.
PATRICifig|224308.179.peg.550.

Similar proteinsi

Entry informationi

Entry nameiYDEC_BACSU
AccessioniPrimary (citable) accession number: P96660
Secondary accession number(s): Q797I7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 3, 2009
Last sequence update: May 1, 1997
Last modified: August 30, 2017
This is version 120 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList