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Protein

Probable endopeptidase YddH

Gene

yddH

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei237 – 2371NucleophileBy similarity
Active sitei290 – 2901Proton acceptorBy similarity

GO - Molecular functioni

  • cysteine-type peptidase activity Source: UniProtKB-KW
  • endopeptidase activity Source: CACAO
  • lysozyme activity Source: CACAO
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protease, Thiol protease

Enzyme and pathway databases

BioCyciBSUB:BSU04970-MONOMER.

Protein family/group databases

CAZyiGH23. Glycoside Hydrolase Family 23.
MEROPSiC40.007.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable endopeptidase YddH (EC:3.4.-.-)
Gene namesi
Name:yddH
Ordered Locus Names:BSU04970
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2929Sequence analysisAdd
BLAST
Chaini30 – 329300Probable endopeptidase YddHPRO_0000019764Add
BLAST

Proteomic databases

PaxDbiP96645.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100002808.

Structurei

3D structure databases

ProteinModelPortaliP96645.
SMRiP96645. Positions 207-328.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the peptidase C40 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105K4H. Bacteria.
COG0741. LUCA.
COG0791. LUCA.
HOGENOMiHOG000267549.
OMAiEAVANNW.
PhylomeDBiP96645.

Family and domain databases

Gene3Di3.90.1720.10. 1 hit.
InterProiIPR023346. Lysozyme-like_dom.
IPR000064. NLP_P60_dom.
[Graphical view]
PfamiPF00877. NLPC_P60. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P96645-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MISKKVVLPL VFSAPFIFFF VLCIVVVMTI SRENQVGDDF IGGGDGEYET
60 70 80 90 100
VGIAPEVERF RAVFEKYARQ EGVFDQVNII MALTMQESGG RSLDIMQSSE
110 120 130 140 150
SIGLPPNSIT DPERSIEVGI KHFKKVFKQA GGDVRLTLQA YNFGSGFIDY
160 170 180 190 200
VKKNGGKYTK KLALDFSRLQ AFKMGWKSYG DPSYVDHVMR YVKGSDKNVK
210 220 230 240 250
PVKGSMDFYE TVMKEALKYE GQPYAWGGSN PETGFDCSGL VQWSFAKAGI
260 270 280 290 300
TLPRTAQEQH GATKKISEKE ATAGDLVFFG GTYEGKAITH VGIYVGNGRM
310 320
FNSNDSGIQY SDLKSGYWRD HLVSFGRIK
Length:329
Mass (Da):36,546
Last modified:May 1, 1997 - v1
Checksum:iB1ADD487E5F5C38E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA. Translation: BAA19334.1.
AL009126 Genomic DNA. Translation: CAB12304.1.
PIRiA69776.
RefSeqiNP_388378.1. NC_000964.3.
WP_009966633.1. NZ_JNCM01000031.1.

Genome annotation databases

EnsemblBacteriaiCAB12304; CAB12304; BSU04970.
GeneIDi938136.
KEGGibsu:BSU04970.
PATRICi18972594. VBIBacSub10457_0518.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA. Translation: BAA19334.1.
AL009126 Genomic DNA. Translation: CAB12304.1.
PIRiA69776.
RefSeqiNP_388378.1. NC_000964.3.
WP_009966633.1. NZ_JNCM01000031.1.

3D structure databases

ProteinModelPortaliP96645.
SMRiP96645. Positions 207-328.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100002808.

Protein family/group databases

CAZyiGH23. Glycoside Hydrolase Family 23.
MEROPSiC40.007.

Proteomic databases

PaxDbiP96645.

Protocols and materials databases

DNASUi938136.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12304; CAB12304; BSU04970.
GeneIDi938136.
KEGGibsu:BSU04970.
PATRICi18972594. VBIBacSub10457_0518.

Phylogenomic databases

eggNOGiENOG4105K4H. Bacteria.
COG0741. LUCA.
COG0791. LUCA.
HOGENOMiHOG000267549.
OMAiEAVANNW.
PhylomeDBiP96645.

Enzyme and pathway databases

BioCyciBSUB:BSU04970-MONOMER.

Family and domain databases

Gene3Di3.90.1720.10. 1 hit.
InterProiIPR023346. Lysozyme-like_dom.
IPR000064. NLP_P60_dom.
[Graphical view]
PfamiPF00877. NLPC_P60. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYDDH_BACSU
AccessioniPrimary (citable) accession number: P96645
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 16, 2003
Last sequence update: May 1, 1997
Last modified: September 7, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. Peptidase families
    Classification of peptidase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.