P96618 (ACPS_BACSU) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Holo-[acyl-carrier-protein] synthase
Short name=Holo-ACP synthase
EC=2.7.8.7

Alternative name(s):
4'-phosphopantetheinyl transferase AcpS

Gene names

Name:	acpS
Synonyms:	ydcB
Ordered Locus Names:	BSU04620

Organism

Bacillus subtilis (strain 168) [Reference proteome] [HAMAP]

Taxonomic identifier

224308 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › Bacillus subtilis group › Bacillus subtilis › Bacillus subtilis subsp. subtilis

Protein attributes

Sequence length	121 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of fatty acid acyl-carrier-protein ACP. Also modifies the D-alanyl carrier protein but fails to recognize PCP and AcpK, an acyl carrier protein of secondary metabolism. Ref.3
Catalytic activity	CoA-(4'-phosphopantetheine) + apo-[acyl-carrier-protein] = adenosine 3',5'-bisphosphate + holo-[acyl-carrier-protein]. Ref.3
Cofactor	Magnesium By similarity.
Subunit structure	Homotrimer. Ref.4
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the P-Pant transferase superfamily. AcpS family.

Ontologies

Keywords
Biological process	Fatty acid biosynthesis Fatty acid metabolism Lipid biosynthesis Lipid metabolism
Cellular component	Cytoplasm
Ligand	Magnesium Metal-binding
Molecular function	Transferase
Technical term	3D-structure Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	fatty acid biosynthetic process Inferred from electronic annotation. Source: HAMAP macromolecule biosynthetic process Inferred from electronic annotation. Source: InterPro
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	holo-[acyl-carrier-protein] synthase activity Inferred from electronic annotation. Source: HAMAP magnesium ion binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 121

121

Holo-[acyl-carrier-protein] synthase HAMAP-Rule MF_00101

PRO_0000175613

Sites

Metal binding

8

1

Magnesium

Metal binding

58

1

Magnesium

Experimental info

Mutagenesis

2

1

I → A: 6% of wild-type activity. Ref.4

Mutagenesis

5

1

I → R: Loss of activity; no trimer formation. Ref.4

Mutagenesis

113

1

Q → E: 14% of wild-type activity. Ref.4

Mutagenesis

113

1

Q → R: Loss of activity; no trimer formation. Ref.4

Secondary structure

1

.

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.

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121

Helix Strand Turn

Details...

Beta strand

2 – 11

10

Helix

12 – 21

10

Helix

25 – 29

5

Helix

32 – 38

7

Helix

43 – 63

21

Beta strand

68 – 71

4

Helix

74 – 76

3

Beta strand

78 – 81

4

Beta strand

87 – 91

5

Turn

92 – 94

3

Beta strand

95 – 105

11

Beta strand

107 – 117

11

Sequences

	Sequence		Length	Mass (Da)
	P96618 [UniParc]. Last modified May 1, 1997. Version 1. Checksum: 6C10401DA7116701	FASTA	121	13,718
	10 20 30 40 50 60 MIYGIGLDIT ELKRIASMAG RQKRFAERIL TRSELDQYYE LSEKRKNEFL AGRFAAKEAF 70 80 90 100 110 120 SKAFGTGIGR QLSFQDIEIR KDQNGKPYII CTKLSQAAVH VSITHTKEYA AAQVVIERLS S

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"A 148 kbp sequence of the region between 35 and 47 degree of the Bacillus subtilis genome." Kasahara Y., Nakai S., Lee S., Sadaie Y., Ogasawara N. Submitted (MAR-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: 168.
[2]	"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis." Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A. Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 168.
[3]	"4'-phosphopantetheine transfer in primary and secondary metabolism of Bacillus subtilis." Mootz H.D., Finking R., Marahiel M.A. J. Biol. Chem. 276:37289-37298(2001) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, CATALYTIC ACTIVITY.
[4]	"Crystal structures of substrate binding to Bacillus subtilis holo-(acyl carrier protein) synthase reveal a novel trimeric arrangement of molecules resulting in three active sites." Parris K.D., Lin L., Tam A., Mathew R., Hixon J., Stahl M., Fritz C.C., Seehra J., Somers W.S. Structure 8:883-895(2000) [PubMed] [Europe PMC] [Abstract] Cited for: MUTAGENESIS OF ILE-2; ILE-5 AND GLN-113, X-RAY CRYSTALLOGRAPHY (1.5 ANGSTROMS) OF NATIVE PROTEIN AND COMPLEXES WITH COENZYME A AND WITH HOLO-(ACYL-CARRIER-PROTEIN), SUBUNIT.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AB001488 Genomic DNA. Translation: BAA19299.1.
AL009126 Genomic DNA. Translation: CAB12269.1.

PIR

H69772.

RefSeq

NP_388343.1. NC_000964.3.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1F7L	X-ray	1.50	A	2-121	[»]
1F7T	X-ray	1.80	A/B/C/D/E/F	2-121	[»]
1F80	X-ray	2.30	A/B/C	3-121	[»]

ProteinModelPortal

P96618.

SMR

P96618. Positions 2-119.

ModBase

Search...

Protein-protein interaction databases

IntAct

P96618. 1 interaction.

STRING

224308.BSU04620.

Proteomic databases

PaxDb

P96618.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

CAB12269; CAB12269; BSU04620.

GeneID

938194.

KEGG

bsu:BSU04620.

PATRIC

18972508. VBIBacSub10457_0482.

Organism-specific databases

GenoList

BSU04620. [Micado]

Phylogenomic databases

eggNOG

COG0736.

HOGENOM

HOG000014315.

KO

K00997.

OMA

VHVSITH.

ProtClustDB

PRK00070.

Enzyme and pathway databases

BioCyc

BSUB:BSU04620-MONOMER.

SABIO-RK

P96618.

Family and domain databases

Gene3D

3.90.470.20. 1 hit.

HAMAP

MF_00101. AcpS.

InterPro

IPR008278. 4-PPantetheinyl_Trfase_SF.
IPR002582. ACPS.
IPR004568. PPantethiene-prot_Trfase_dom.
[Graphical view]

Pfam

PF01648. ACPS. 1 hit.
[Graphical view]

ProDom

PD004282. PPantethiene-prot_Trfase. 1 hit.
[Graphical view] [Entries sharing at least one domain]

SUPFAM

SSF56214. 4-PPT_transf. 1 hit.

TIGRFAMs

TIGR00516. acpS. 1 hit.
TIGR00556. pantethn_trn. 1 hit.

ProtoNet

Search...

Other

BindingDB

P96618.

ChEMBL

CHEMBL4734.

EvolutionaryTrace

P96618.

Entry information

Entry name

ACPS_BACSU

Accession

Primary (citable) accession number: P96618

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 30, 2000
Last sequence update:	May 1, 1997
Last modified:	May 1, 2013
This is version 106 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program