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Protein

Thioredoxin-like protein YdbP

Gene

ydbP

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Enzyme and pathway databases

BioCyciBSUB:BSU04550-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Thioredoxin-like protein YdbP
Gene namesi
Name:ydbP
Ordered Locus Names:BSU04550
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 106106Thioredoxin-like protein YdbPPRO_0000380612Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi29 ↔ 32Redox-activePROSITE-ProRule annotation

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiP96611.

Expressioni

Inductioni

Activated by SigB in response to ethanol stress.1 Publication

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100002578.

Structurei

3D structure databases

ProteinModelPortaliP96611.
SMRiP96611. Positions 1-105.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 106106ThioredoxinPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the thioredoxin family.Curated
Contains 1 thioredoxin domain.PROSITE-ProRule annotation

Keywords - Domaini

Redox-active center

Phylogenomic databases

eggNOGiENOG4105SZ6. Bacteria.
COG0526. LUCA.
HOGENOMiHOG000292981.
InParanoidiP96611.
OMAiQYDWFEI.
PhylomeDBiP96611.

Family and domain databases

Gene3Di3.40.30.10. 1 hit.
InterProiIPR005746. Thioredoxin.
IPR012336. Thioredoxin-like_fold.
IPR013766. Thioredoxin_domain.
[Graphical view]
PANTHERiPTHR10438. PTHR10438. 1 hit.
PfamiPF00085. Thioredoxin. 1 hit.
[Graphical view]
PIRSFiPIRSF000077. Thioredoxin. 1 hit.
SUPFAMiSSF52833. SSF52833. 1 hit.
PROSITEiPS51352. THIOREDOXIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P96611-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKITTNEQF NELIQSDKEI IVKFYADWCP DCTRMNMFIG DILEEYNQND
60 70 80 90 100
WYELNKDELP DLAEKYQVMG IPSLLIFKNG EKTAHLHSAN AKTPEEVTEF

LSEHIS
Length:106
Mass (Da):12,432
Last modified:May 1, 1997 - v1
Checksum:iFB9C15D875A0FCC9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA. Translation: BAA19292.1.
AL009126 Genomic DNA. Translation: CAB12262.1.
PIRiC69772.
RefSeqiNP_388336.1. NC_000964.3.
WP_003234326.1. NZ_JNCM01000031.1.

Genome annotation databases

EnsemblBacteriaiCAB12262; CAB12262; BSU04550.
GeneIDi939940.
KEGGibsu:BSU04550.
PATRICi18972494. VBIBacSub10457_0475.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA. Translation: BAA19292.1.
AL009126 Genomic DNA. Translation: CAB12262.1.
PIRiC69772.
RefSeqiNP_388336.1. NC_000964.3.
WP_003234326.1. NZ_JNCM01000031.1.

3D structure databases

ProteinModelPortaliP96611.
SMRiP96611. Positions 1-105.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100002578.

Proteomic databases

PaxDbiP96611.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12262; CAB12262; BSU04550.
GeneIDi939940.
KEGGibsu:BSU04550.
PATRICi18972494. VBIBacSub10457_0475.

Phylogenomic databases

eggNOGiENOG4105SZ6. Bacteria.
COG0526. LUCA.
HOGENOMiHOG000292981.
InParanoidiP96611.
OMAiQYDWFEI.
PhylomeDBiP96611.

Enzyme and pathway databases

BioCyciBSUB:BSU04550-MONOMER.

Family and domain databases

Gene3Di3.40.30.10. 1 hit.
InterProiIPR005746. Thioredoxin.
IPR012336. Thioredoxin-like_fold.
IPR013766. Thioredoxin_domain.
[Graphical view]
PANTHERiPTHR10438. PTHR10438. 1 hit.
PfamiPF00085. Thioredoxin. 1 hit.
[Graphical view]
PIRSFiPIRSF000077. Thioredoxin. 1 hit.
SUPFAMiSSF52833. SSF52833. 1 hit.
PROSITEiPS51352. THIOREDOXIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDBP_BACSU
AccessioniPrimary (citable) accession number: P96611
Secondary accession number(s): Q797L1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: May 1, 1997
Last modified: September 7, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.