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Protein

Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons

Gene

phnR

Organism
Salmonella typhi
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi36 – 5520H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons
Gene namesi
Name:phnR
Ordered Locus Names:STY0469, t2433
OrganismiSalmonella typhi
Taxonomic identifieri90370 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
Proteomesi
  • UP000002670 Componenti: Chromosome
  • UP000000541 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 239239Putative transcriptional regulator of 2-aminoethylphosphonate degradation operonsPRO_0000286733Add
BLAST

Proteomic databases

PRIDEiP96061.

Interactioni

Protein-protein interaction databases

STRINGi220341.STY0469.

Structurei

3D structure databases

ProteinModelPortaliP96061.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini8 – 7669HTH gntR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH gntR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4106S9K. Bacteria.
COG2188. LUCA.
HOGENOMiHOG000228717.
OMAiRHDAISI.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR017722. Tscrpt_reg_PhnR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
TIGRFAMsiTIGR03337. phnR. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P96061-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSIPGDIPQ YLLIKAQLQA RIQSGALKSG DKLPSERELC AIFNTTRITI
60 70 80 90 100
RESLAQLESS GLIWRADRRG WFVTPERLWL DPTQNTNFHK LCREQGREPK
110 120 130 140 150
TALLSGVLTT VPVEVMEPLQ LQPFDQIYLL TRLRYADGRA VCYCENHCLP
160 170 180 190 200
ARVPELLQYD LNGSLTEVYE SHYNLVYTSM HLSFYPTAMP AQAAQALGVM
210 220 230
EGRPALLLRR LNYDQHGRVL DLDIEYWRHD SLRIEVDTH
Length:239
Mass (Da):27,482
Last modified:May 1, 1997 - v1
Checksum:i006B79DE87B2C0A2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014613 Genomic DNA. Translation: AAO70023.1.
AL513382 Genomic DNA. Translation: CAD08886.1.
PIRiT46948.
RefSeqiNP_455024.1. NC_003198.1.
WP_000836268.1. NZ_LUHL01000024.1.

Genome annotation databases

EnsemblBacteriaiAAO70023; AAO70023; t2433.
CAD08886; CAD08886; CAD08886.
GeneIDi1246943.
KEGGistt:t2433.
sty:STY0469.
PATRICi18538772. VBISalEnt120419_0470.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014613 Genomic DNA. Translation: AAO70023.1.
AL513382 Genomic DNA. Translation: CAD08886.1.
PIRiT46948.
RefSeqiNP_455024.1. NC_003198.1.
WP_000836268.1. NZ_LUHL01000024.1.

3D structure databases

ProteinModelPortaliP96061.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi220341.STY0469.

Proteomic databases

PRIDEiP96061.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO70023; AAO70023; t2433.
CAD08886; CAD08886; CAD08886.
GeneIDi1246943.
KEGGistt:t2433.
sty:STY0469.
PATRICi18538772. VBISalEnt120419_0470.

Phylogenomic databases

eggNOGiENOG4106S9K. Bacteria.
COG2188. LUCA.
HOGENOMiHOG000228717.
OMAiRHDAISI.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR017722. Tscrpt_reg_PhnR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
TIGRFAMsiTIGR03337. phnR. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPHNR_SALTI
AccessioniPrimary (citable) accession number: P96061
Secondary accession number(s): Q7ANG7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: May 1, 1997
Last modified: September 7, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.