Glycogen debranching enzyme (TreX) - Sulfolobus solfataricus

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Unreviewed, UniProtKB/TrEMBL P95868 (P95868_SULSO)

Last modified June 16, 2009. Version 57. History...

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Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information

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Names and origin

Protein names

Submitted name:
    Glycogen debranching enzyme (TreX) EMBL AAK42273.1
    EC=3.2.1.-
Submitted name:
    Glycogen operon protein GlgX EMBL CAA69504.1

Gene names

Name:	orf c06021 EMBL CAA69504.1
Synonyms:	treX EMBL AAK42273.1
Ordered Locus Names:	SSO2094

Organism

Sulfolobus solfataricus [Complete proteome] [HAMAP] EMBL CAA69504.1

Taxonomic identifier

2287 [NCBI]

Taxonomic lineage

Archaea › Crenarchaeota › Thermoprotei › Sulfolobales › Sulfolobaceae › Sulfolobus

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Protein attributes

Sequence length	718 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

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Ontologies

Keywords
Molecular function	Glycosidase Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycogen catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro glycogen debranching enzyme activity Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

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Sequences

Sequence

Length

Mass (Da)

Tools

P95868-1 [UniParc].

Last modified May 1, 1997. Version 1.
Checksum: 43E7538DE8131788
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FASTA

718

83,091

        10         20         30         40         50         60 
MALFFRTRDR PLRPGDPYPL GSNWIEDDDG VNFSLFSENA EKVELLLYSL TNQKYPKEII 

        70         80         90        100        110        120 
EVKNKTGDIW HVFVPGLRPG QLYAYRVYGP YKPELGLRFN PNKVLIDPYA KAINGSVIWN 

       130        140        150        160        170        180 
DAVFGYKIGD QNQDLTYDER DSGEYVPKSV VINPYFEWDD EDFIKGKKVP LKDTVIYEVH 

       190        200        210        220        230        240 
VKGFTKLRLD LPENIRGTYE GLASEQMISY LKDLGITTVE LMPVFHFIDQ RFLTDKGLTN 

       250        260        270        280        290        300 
YWGYDPINFF SPECRYSSTG CLGGQVLSFK KMVNELHNAG IEVIIDVVYN HTAEGNHLGP 

       310        320        330        340        350        360 
TLSFRGIDNT AYYMLQPDNK RYYLDFTGTG NTLNLSHPRV IQMVLDSLRY WVTEMHVDGF 

       370        380        390        400        410        420 
RFDLAAALAR ELYSVNMLNT FFIALQQDPI LSQVKLIAEP WDVGQGGYQV GNFPYQWAEW 

       430        440        450        460        470        480 
NGKYRDSIRR FWRGEALPYS EIANRLLGSP DIYLGNNKTP FASINYVTSH DGFTLEDLVS 

       490        500        510        520        530        540 
YNQKHNEANG FNNQDGMNEN YSWNCGAEGP TNDQNVVICR EKQKRNFMIT LLVSQGTPMI 

       550        560        570        580        590        600 
LGGDELSRTQ RGNNNAFCQD NEITWFDWNL DERKSKFLEF VKKMIQFYRA HPAFRRERYF 

       610        620        630        640        650        660 
QGKKLFGMPL KDVTFYTLEG REVDEKTWSS PTQLVIFVLE GSVMDEINMY GERIADDSFL 

       670        680        690        700        710 
IILNANPNNV KVKFPKGKWE LVISSYLREI KPEERIIEGE KELEIEGRTA LVYRRIEL

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References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Organizational characteristics and information content of an archaeal genome: 156 kb of sequence from Sulfolobus solfataricus P2." Sensen C.W., Klenk H.-P., Singh R.K., Allard G., Chan C.C.-Y., Liu Q.Y., Penny S.L., Young F., Schenk M.E., Gaasterland T., Doolittle W.F., Ragan M.A., Charlebois R.L. Mol. Microbiol. 22:175-191(1996) [PubMed: 8899719] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: P2 EMBL CAA69504.1.
[2]	"The complete genome of the crenarchaeon Sulfolobus solfataricus P2." She Q., Singh R.K., Confalonieri F., Zivanovic Y., Allard G., Awayez M.J., Chan-Weiher C.C.-Y., Clausen I.G., Curtis B.A., De Moors A., Erauso G., Fletcher C., Gordon P.M.K., Heikamp-de Jong I., Jeffries A.C., Kozera C.J., Medina N., Peng X. Van der Oost J. Proc. Natl. Acad. Sci. U.S.A. 98:7835-7840(2001) [PubMed: 11427726] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2.

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Cross-references

Sequence databases

AE006641 Genomic DNA. Translation: AAK42273.1.
Y08256 Genomic DNA. Translation: CAA69504.1.

PIR

S73088.

RefSeq

NP_343483.1.

3D structure databases

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2VNC	X-ray	3.00	A/B	1-718	[»]
2VR5	X-ray	2.80	A/B	1-718	[»]
2VUY	X-ray	3.00	A/B	1-718	[»]

ModBase

Search...

Protein family/group databases

CAZy

CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Genome annotation databases

GeneID

1453600.

GenomeReviews

Gene locus SSO2094 in contig AE006641_GR.

KEGG

sso:SSO2094.

NMPDR

fig|273057.1.peg.1906.

Organism-specific databases

CMR

Search...

Phylogenomic databases

HOGENOM

P95868.

OMA

P95868. AIREQQK.

Enzyme and pathway databases

BioCyc

SSOL273057:SSO2094-MON.

Family and domain databases

InterPro

IPR006048. A-amylase_b_C.
IPR011837. GlgX_debranch.
IPR006047. Glyco_hydro_13_cat.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_sg_catalytic.
IPR013783. Ig-like_fold.
[Graphical view]

Gene3D

G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
G3DSA:2.60.40.10. Ig-like_fold. 1 hit.

Pfam

PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]

TIGRFAMs

TIGR02100. glgX_debranch. 1 hit.

ProtoNet

Search...

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Entry information

Entry name

P95868_SULSO

Accession

Primary (citable) accession number: P95868

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 1997
Last sequence update:	May 1, 1997
Last modified:	June 16, 2009
This is version 57 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information