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Protein

RNA polymerase sigma factor RpoH

Gene

rpoH

Organism
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi256 – 275H-T-H motifUniRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processStress responseUniRule annotation, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factor RpoHUniRule annotation
Alternative name(s):
RNA polymerase sigma-32 factorUniRule annotation
Gene namesi
Name:rpoHUniRule annotationImported
OrganismiRhodobacter sphaeroides (Rhodopseudomonas sphaeroides)Imported
Taxonomic identifieri1063 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Interacts with the RNA polymerase core enzyme.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliP95657
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini255 – 281RNA_pol_sigma70InterPro annotationAdd BLAST27

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni53 – 122Sigma-70 factor domain-2UniRule annotationAdd BLAST70

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi77 – 80Interaction with polymerase core subunit RpoCUniRule annotation4

Phylogenomic databases

eggNOGiENOG4105DEK Bacteria
COG0568 LUCA

Family and domain databases

HAMAPiMF_00961 Sigma70_RpoH, 1 hit
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR000943 RNA_pol_sigma70
IPR009042 RNA_pol_sigma70_r1_2
IPR007627 RNA_pol_sigma70_r2
IPR007630 RNA_pol_sigma70_r4
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR012759 RNA_pol_sigma_RpoH_proteobac
PfamiView protein in Pfam
PF00140 Sigma70_r1_2, 1 hit
PF04542 Sigma70_r2, 1 hit
PF04545 Sigma70_r4, 1 hit
PIRSFiPIRSF000770 RNA_pol_sigma-SigE/K, 1 hit
PRINTSiPR00046 SIGMA70FCT
SUPFAMiSSF88659 SSF88659, 1 hit
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02392 rpoH_proteo, 1 hit
TIGR02937 sigma70-ECF, 1 hit
PROSITEiView protein in PROSITE
PS00716 SIGMA70_2, 1 hit

Sequencei

Sequence statusi: Complete.

P95657-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTYTSLPAP SPEQGLNRYM QEIRKFPLLE PEEEYMLAKR WVDHQDNRAA
60 70 80 90 100
HKLVTSHLRL AAKIAMGYRG YGLPQAEVIS EANVGLMQAV KRFDPEKGFR
110 120 130 140 150
LATYAMWWIR ASIQEYILRS WSLVKLGTTS AQKKLFFNLR KAKAKLGALE
160 170 180 190 200
EGDLRPENVA QIAKDLGVSE TEVIDMNRRL SGSDASLNAT IGSDGEGSTQ
210 220 230 240 250
WQDWLEDEDS DQAADYAERD ELEIRRELLA QSMSVLNDRE KDILVQRRLT
260 270 280 290
DDPVTLEELS EGYGVSRERI RQIEVRAFEK LQAKMRELAR SKGMTIPA
Length:298
Mass (Da):33,981
Last modified:May 1, 1997 - v1
Checksum:i3291EAEA53CBC1BA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82397 Genomic DNA Translation: AAC46050.1
RefSeqiWP_002719564.1, NZ_CP015287.1

Similar proteinsi

Entry informationi

Entry nameiP95657_RHOSH
AccessioniPrimary (citable) accession number: P95657
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 1997
Last sequence update: May 1, 1997
Last modified: June 20, 2018
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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