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Protein
Submitted name:

NodD2 protein

Gene

nodD2

Organism
Rhizobium galegae
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi23 – 42H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
NodD2 proteinImported
Gene namesi
Name:nodD2Imported
OrganismiRhizobium galegaeImported
Taxonomic identifieri399 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupNeorhizobium

Structurei

3D structure databases

ProteinModelPortaliP95613.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 63HTH lysR-type DNA-bindingInterPro annotationAdd BLAST58

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.

Sequencei

Sequence statusi: Complete.

P95613-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFKGLDLNL LVAFDAVMTE RSVTAAARSI NLSQPAMSAA IARLRLYFGD
60 70 80 90 100
ELFIMRGRSF LTTPRADALA VAVRDSLLNI QFSIISADPF CPAKSGRCFR
110 120 130 140 150
FVLSDSMTLV FFGKVAERVA REAPGVSFEL LPLDDEPSEL LRRGSADFII
160 170 180 190 200
LPDLFMSNEH PKRKLFGETL VCVGCPRNSL LTKQLSLEKY FSLGHIVAKF
210 220 230 240 250
GSTKGPSLEQ WLSSQHGFKM RVELVVPSFV SIPPLLSGTN RIATLPLRLV
260 270 280 290 300
KKLEHAIPLR IVKHPFSALS FNEIVQWPAL HNADAASIWM REILLQEASS
310 320
MDYMDAIEPF RSAECSRTRK RGGDVR
Length:326
Mass (Da):36,373
Last modified:May 1, 1997 - v1
Checksum:iBFE9C32F6719E28B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y08963 Genomic DNA. Translation: CAA70157.1.

Genome annotation databases

EnsemblBacteriaiCDN51711; CDN51711; RG540_PA10350.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y08963 Genomic DNA. Translation: CAA70157.1.

3D structure databases

ProteinModelPortaliP95613.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCDN51711; CDN51711; RG540_PA10350.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiP95613_RHIGA
AccessioniPrimary (citable) accession number: P95613
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 1997
Last sequence update: May 1, 1997
Last modified: May 10, 2017
This is version 90 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.