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Protein
Submitted name:

RpoD2 sigma factor

Gene

rpoD2

Organism
Microcystis aeruginosa
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.SAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation, Sigma factorSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Submitted name:
RpoD2 sigma factorImported
Gene namesi
Name:rpoD2Imported
OrganismiMicrocystis aeruginosaImported
Taxonomic identifieri1126 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesMicrocystaceaeMicrocystis

Structurei

3D structure databases

ProteinModelPortaliP94906
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini336 – 362RNA_pol_sigma70InterPro annotationAdd BLAST27

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili220 – 240Sequence analysisAdd BLAST21

Sequence similaritiesi

Belongs to the sigma-70 factor family.SAAS annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4106RMN Bacteria
ENOG410XS9E LUCA

Family and domain databases

Gene3Di1.10.10.10, 2 hits
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR000943 RNA_pol_sigma70
IPR009042 RNA_pol_sigma70_r1_2
IPR007627 RNA_pol_sigma70_r2
IPR007624 RNA_pol_sigma70_r3
IPR007630 RNA_pol_sigma70_r4
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR017848 RNA_pol_sigma_RpoD_cyanobac
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF00140 Sigma70_r1_2, 1 hit
PF04542 Sigma70_r2, 1 hit
PF04539 Sigma70_r3, 1 hit
PF04545 Sigma70_r4, 1 hit
PRINTSiPR00046 SIGMA70FCT
SUPFAMiSSF88659 SSF88659, 2 hits
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02997 Sig70-cyanoRpoD, 1 hit
TIGR02937 sigma70-ECF, 1 hit
PROSITEiView protein in PROSITE
PS00716 SIGMA70_2, 1 hit

Sequencei

Sequence statusi: Complete.

P94906-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKISKLAADD NFNQIIALET NPLELDSVDF GERTDEDLTE SLPETLKNTR
60 70 80 90 100
GSSGTGYDKG SNEDTVGAFF KEMARYPLLS AEEEIELAYS VKFLMEAEEV
110 120 130 140 150
RQKLQENLHR PPTKTEWAIA LELDNERQLE NRLYRGRTAK RKMIRSNLRL
160 170 180 190 200
VVSIAKRYLN RGVPFLDLIQ EGAIGLNRAA EKFDPNKGYK FSTYAYWWIR
210 220 230 240 250
QAITRTIAND ARTIRLPIHI VEKLNKLKKA QILKQDLQRN PNERELAERL
260 270 280 290 300
EITPEQLRQL LQLRRQSLSL NHRVGKGEDT ELVDLLEDDD LQLPEDKMNE
310 320 330 340 350
MMMRQEIFAV LSDVLTEREK DVISLRYGLA TSQPYTLEEV GGMFNLSRER
360 370
VRQIQTKAMR KLRRPQVARR LKGWLH
Length:376
Mass (Da):43,784
Last modified:May 1, 1997 - v1
Checksum:i9400034BD91E3D06
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D86575 Genomic DNA Translation: BAA13122.1

Similar proteinsi

Entry informationi

Entry nameiP94906_MICAE
AccessioniPrimary (citable) accession number: P94906
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 1997
Last sequence update: May 1, 1997
Last modified: April 25, 2018
This is version 96 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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