Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

RpoD2 sigma factor

Gene

rpoD2

Organism
Microcystis aeruginosa
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.SAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RpoD2 sigma factorImported
Gene namesi
Name:rpoD2Imported
OrganismiMicrocystis aeruginosaImported
Taxonomic identifieri1126 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesMicrocystis

PTM / Processingi

Proteomic databases

PaxDbiP94906.

Interactioni

Protein-protein interaction databases

STRINGi449447.MAE_52900.

Structurei

3D structure databases

ProteinModelPortaliP94906.
SMRiP94906. Positions 135-209.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini336 – 36227RNA_pol_sigma70InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the sigma-70 factor family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4106RMN. Bacteria.
ENOG410XS9E. LUCA.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR017848. RNA_pol_sigma_RpoD_cyanobac.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02997. Sig70-cyanoRpoD. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00716. SIGMA70_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P94906-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKISKLAADD NFNQIIALET NPLELDSVDF GERTDEDLTE SLPETLKNTR
60 70 80 90 100
GSSGTGYDKG SNEDTVGAFF KEMARYPLLS AEEEIELAYS VKFLMEAEEV
110 120 130 140 150
RQKLQENLHR PPTKTEWAIA LELDNERQLE NRLYRGRTAK RKMIRSNLRL
160 170 180 190 200
VVSIAKRYLN RGVPFLDLIQ EGAIGLNRAA EKFDPNKGYK FSTYAYWWIR
210 220 230 240 250
QAITRTIAND ARTIRLPIHI VEKLNKLKKA QILKQDLQRN PNERELAERL
260 270 280 290 300
EITPEQLRQL LQLRRQSLSL NHRVGKGEDT ELVDLLEDDD LQLPEDKMNE
310 320 330 340 350
MMMRQEIFAV LSDVLTEREK DVISLRYGLA TSQPYTLEEV GGMFNLSRER
360 370
VRQIQTKAMR KLRRPQVARR LKGWLH
Length:376
Mass (Da):43,784
Last modified:May 1, 1997 - v1
Checksum:i9400034BD91E3D06
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D86575 Genomic DNA. Translation: BAA13122.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D86575 Genomic DNA. Translation: BAA13122.1.

3D structure databases

ProteinModelPortaliP94906.
SMRiP94906. Positions 135-209.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi449447.MAE_52900.

Proteomic databases

PaxDbiP94906.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4106RMN. Bacteria.
ENOG410XS9E. LUCA.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR017848. RNA_pol_sigma_RpoD_cyanobac.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02997. Sig70-cyanoRpoD. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "A new sigma factor homolog in a cyanobacterium: cloning, sequencing, and light-responsive transcripts of rpoD2 from Microcystis aeruginosa K-81."
    Asayama M., Suzuki A., Nozawa S., Yamada A., Tanaka K., Takahashi H., Aida T., Shirai M.
    Biochim. Biophys. Acta 1351:31-36(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K-81Imported.

Entry informationi

Entry nameiP94906_MICAE
AccessioniPrimary (citable) accession number: P94906
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 1997
Last sequence update: May 1, 1997
Last modified: July 6, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.