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Protein

Uncharacterized HTH-type transcriptional regulator YwoH

Gene

ywoH

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi51 – 74H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU36440-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YwoH
Gene namesi
Name:ywoH
Ordered Locus Names:BSU36440
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003605561 – 137Uncharacterized HTH-type transcriptional regulator YwoHAdd BLAST137

Proteomic databases

PaxDbiP94578.
PRIDEiP94578.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100019696.

Structurei

3D structure databases

ProteinModelPortaliP94578.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 136HTH marR-typePROSITE-ProRule annotationAdd BLAST132

Sequence similaritiesi

Contains 1 HTH marR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4107MII. Bacteria.
ENOG410XUB6. LUCA.
HOGENOMiHOG000094012.
InParanoidiP94578.
OMAiENGWIQR.
PhylomeDBiP94578.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000835. HTH_MarR-typ.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01047. MarR. 1 hit.
[Graphical view]
PRINTSiPR00598. HTHMARR.
SMARTiSM00347. HTH_MARR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50995. HTH_MARR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P94578-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYVNRHLIH QINQSARLIA KKANEQLEPF GLYSSQWSVL YCLRTIGPMT
60 70 80 90 100
QKEIWSYLNV EAPTVTRTIK RLEENGWVQR RQGEDKREKL VVLTKEAEKK
110 120 130
YEEINVKMLK FEEELLADFR DEDKEAFSHL FRMFLQQ
Length:137
Mass (Da):16,424
Last modified:May 1, 1997 - v1
Checksum:iBA68D6518A7D5881
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z82987 Genomic DNA. Translation: CAB05380.1.
AL009126 Genomic DNA. Translation: CAB15661.1.
PIRiC70065.
RefSeqiNP_391525.1. NC_000964.3.
WP_003227771.1. NZ_JNCM01000034.1.

Genome annotation databases

EnsemblBacteriaiCAB15661; CAB15661; BSU36440.
GeneIDi936923.
KEGGibsu:BSU36440.
PATRICi18979312. VBIBacSub10457_3818.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z82987 Genomic DNA. Translation: CAB05380.1.
AL009126 Genomic DNA. Translation: CAB15661.1.
PIRiC70065.
RefSeqiNP_391525.1. NC_000964.3.
WP_003227771.1. NZ_JNCM01000034.1.

3D structure databases

ProteinModelPortaliP94578.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100019696.

Proteomic databases

PaxDbiP94578.
PRIDEiP94578.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15661; CAB15661; BSU36440.
GeneIDi936923.
KEGGibsu:BSU36440.
PATRICi18979312. VBIBacSub10457_3818.

Phylogenomic databases

eggNOGiENOG4107MII. Bacteria.
ENOG410XUB6. LUCA.
HOGENOMiHOG000094012.
InParanoidiP94578.
OMAiENGWIQR.
PhylomeDBiP94578.

Enzyme and pathway databases

BioCyciBSUB:BSU36440-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000835. HTH_MarR-typ.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01047. MarR. 1 hit.
[Graphical view]
PRINTSiPR00598. HTHMARR.
SMARTiSM00347. HTH_MARR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50995. HTH_MARR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYWOH_BACSU
AccessioniPrimary (citable) accession number: P94578
Secondary accession number(s): Q795A6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: May 1, 1997
Last modified: October 5, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.