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Protein

Putative metabolite transport protein YncC

Gene

yncC

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciBSUB:BSU17630-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative metabolite transport protein YncC
Gene namesi
Name:yncC
Ordered Locus Names:BSU17630
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei13 – 3321HelicalSequence analysisAdd
BLAST
Transmembranei50 – 7021HelicalSequence analysisAdd
BLAST
Transmembranei88 – 10821HelicalSequence analysisAdd
BLAST
Transmembranei111 – 13121HelicalSequence analysisAdd
BLAST
Transmembranei146 – 16621HelicalSequence analysisAdd
BLAST
Transmembranei175 – 19521HelicalSequence analysisAdd
BLAST
Transmembranei256 – 27621HelicalSequence analysisAdd
BLAST
Transmembranei295 – 31521HelicalSequence analysisAdd
BLAST
Transmembranei323 – 34321HelicalSequence analysisAdd
BLAST
Transmembranei358 – 37821HelicalSequence analysisAdd
BLAST
Transmembranei393 – 41321HelicalSequence analysisAdd
BLAST
Transmembranei416 – 43621HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 471471Putative metabolite transport protein YncCPRO_0000360511Add
BLAST

Proteomic databases

PaxDbiP94493.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009701.

Structurei

3D structure databases

ProteinModelPortaliP94493.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105C54. Bacteria.
ENOG410XQKC. LUCA.
HOGENOMiHOG000202868.
InParanoidiP94493.
OMAiFGRRKYL.
OrthoDBiEOG65J51S.
PhylomeDBiP94493.

Family and domain databases

InterProiIPR020846. MFS_dom.
IPR005828. MFS_sugar_transport_like.
IPR003663. Sugar/inositol_transpt.
IPR005829. Sugar_transporter_CS.
[Graphical view]
PfamiPF00083. Sugar_tr. 1 hit.
[Graphical view]
PRINTSiPR00171. SUGRTRNSPORT.
SUPFAMiSSF103473. SSF103473. 1 hit.
TIGRFAMsiTIGR00879. SP. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
PS00217. SUGAR_TRANSPORT_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P94493-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDMNEHRNRR LKLIMISATF GGLLFGYDTG VINGALPFMA RPDQLDLTPV
60 70 80 90 100
TEGLVTSILL LGAAFGALLC GRLADRYGRR KMILNLSFLF FLASLGTALA
110 120 130 140 150
PNVFIMAVFR FLLGLAVGGA SAMVPAFLAE MAPHEKRGRM VTQNELMIVG
160 170 180 190 200
GQFLAYVFNA ILGVTMANTG HVWRYMLVIC AVPAIMLFAS MLKVPESPRW
210 220 230 240 250
LISKGKNSEA LRVLKQIRED KRAEAECREI QEAVEKDTAL EKASLKDFST
260 270 280 290 300
PWLRRLLWIG IGVAIVNQIT GVNSIMYYGT QILKESGFGT KAALIANIGN
310 320 330 340 350
GLISVIAVIF GIWLVGKVRR RPILLIGLAG TTTALLLIAI FSIVLDGSMA
360 370 380 390 400
LPYVVLSLTV LFLAFMQGCV GPVTWLVIAE IFPQRLRGLG SGISVFFLWI
410 420 430 440 450
LNFVIGFAFP ILLSSVGLSF TFFIFVALGV LAIGFVYKFM PETKGRTLEE
460 470
LEEHFRSRHD HNTPEQSVIE V
Length:471
Mass (Da):51,786
Last modified:June 16, 2009 - v2
Checksum:iCD3DEACE80611413
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti77 – 782YG → DR in AAB41096 (Ref. 1) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U66480 Genomic DNA. Translation: AAB41096.1.
AL009126 Genomic DNA. Translation: CAB13647.2.
PIRiE69888.
RefSeqiNP_389645.2. NC_000964.3.
WP_010886516.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB13647; CAB13647; BSU17630.
GeneIDi939540.
KEGGibsu:BSU17630.
PATRICi18975343. VBIBacSub10457_1863.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U66480 Genomic DNA. Translation: AAB41096.1.
AL009126 Genomic DNA. Translation: CAB13647.2.
PIRiE69888.
RefSeqiNP_389645.2. NC_000964.3.
WP_010886516.1. NZ_JNCM01000035.1.

3D structure databases

ProteinModelPortaliP94493.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009701.

Proteomic databases

PaxDbiP94493.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13647; CAB13647; BSU17630.
GeneIDi939540.
KEGGibsu:BSU17630.
PATRICi18975343. VBIBacSub10457_1863.

Phylogenomic databases

eggNOGiENOG4105C54. Bacteria.
ENOG410XQKC. LUCA.
HOGENOMiHOG000202868.
InParanoidiP94493.
OMAiFGRRKYL.
OrthoDBiEOG65J51S.
PhylomeDBiP94493.

Enzyme and pathway databases

BioCyciBSUB:BSU17630-MONOMER.

Family and domain databases

InterProiIPR020846. MFS_dom.
IPR005828. MFS_sugar_transport_like.
IPR003663. Sugar/inositol_transpt.
IPR005829. Sugar_transporter_CS.
[Graphical view]
PfamiPF00083. Sugar_tr. 1 hit.
[Graphical view]
PRINTSiPR00171. SUGRTRNSPORT.
SUPFAMiSSF103473. SSF103473. 1 hit.
TIGRFAMsiTIGR00879. SP. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
PS00217. SUGAR_TRANSPORT_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequencing of a 26 kb region of the Bacillus subtilis genome downstream of spoVJ."
    Borchert S., Klein C., Piksa B., Hammelmann M., Entian K.-D.
    Submitted (AUG-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  3. "From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later."
    Barbe V., Cruveiller S., Kunst F., Lenoble P., Meurice G., Sekowska A., Vallenet D., Wang T., Moszer I., Medigue C., Danchin A.
    Microbiology 155:1758-1775(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: SEQUENCE REVISION TO 77-78.

Entry informationi

Entry nameiYNCC_BACSU
AccessioniPrimary (citable) accession number: P94493
Secondary accession number(s): Q796H1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: June 16, 2009
Last modified: July 6, 2016
This is version 110 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.