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Protein

HTH-type transcriptional regulator BsdA

Gene

bsdA

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Could be a positive regulator of bsdBCD expression in response to salicylic acid.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi18 – 37H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU03620-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional regulator BsdA
Alternative name(s):
Bsd operon regulatory protein
Gene namesi
Name:bsdA
Synonyms:yclA
Ordered Locus Names:BSU03620
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003599561 – 290HTH-type transcriptional regulator BsdAAdd BLAST290

Proteomic databases

PaxDbiP94403.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100002053.

Structurei

3D structure databases

ProteinModelPortaliP94403.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 59HTH lysR-typePROSITE-ProRule annotationAdd BLAST59

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4106P55. Bacteria.
ENOG410YGJ0. LUCA.
HOGENOMiHOG000233514.
InParanoidiP94403.
OMAiRIVCECH.
PhylomeDBiP94403.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P94403-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDIRQLRYFI TIAQEQKITS AAKKLHMAQP PLSRQLKQLE DELGVVLFDR
60 70 80 90 100
NKKKQMTLTY EGAVFLKRAK EILHRFEDAV IEVQELKEEV AGTLAVGSTI
110 120 130 140 150
YCAALMLEKV TQIKERYPHL TFNIWENEPA TLLELLESRQ IDAAVTTTLI
160 170 180 190 200
KSDTVQFKQL DDIPCVLVLS DEAGYPCGDT IKMVDIPSFP LILLRPVNGK
210 220 230 240 250
GVYNQVMNEF HRLNLEPRIV CECHDSATLL SLVSSGFGAS ILPVTMIPVH
260 270 280 290
MRNHVHTVHI ENNPFIMTPA VMWRTDSYLP KPAQQFLDLF
Length:290
Mass (Da):32,987
Last modified:May 1, 1997 - v1
Checksum:i81E691A2E2D2C88C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50453 Genomic DNA. Translation: BAA08995.1.
AL009126 Genomic DNA. Translation: CAB12156.1.
PIRiF69761.
RefSeqiNP_388244.1. NC_000964.3.
WP_003246552.1. NZ_JNCM01000031.1.

Genome annotation databases

EnsemblBacteriaiCAB12156; CAB12156; BSU03620.
GeneIDi938299.
KEGGibsu:BSU03620.
PATRICi18972291. VBIBacSub10457_0374.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50453 Genomic DNA. Translation: BAA08995.1.
AL009126 Genomic DNA. Translation: CAB12156.1.
PIRiF69761.
RefSeqiNP_388244.1. NC_000964.3.
WP_003246552.1. NZ_JNCM01000031.1.

3D structure databases

ProteinModelPortaliP94403.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100002053.

Proteomic databases

PaxDbiP94403.

Protocols and materials databases

DNASUi938299.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12156; CAB12156; BSU03620.
GeneIDi938299.
KEGGibsu:BSU03620.
PATRICi18972291. VBIBacSub10457_0374.

Phylogenomic databases

eggNOGiENOG4106P55. Bacteria.
ENOG410YGJ0. LUCA.
HOGENOMiHOG000233514.
InParanoidiP94403.
OMAiRIVCECH.
PhylomeDBiP94403.

Enzyme and pathway databases

BioCyciBSUB:BSU03620-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiBSDA_BACSU
AccessioniPrimary (citable) accession number: P94403
Secondary accession number(s): Q797P8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: May 1, 1997
Last modified: October 5, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.