Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized HTH-type transcriptional regulator YcgK

Gene

ycgK

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi18 – 3720H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU03170-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YcgK
Gene namesi
Name:ycgK
Ordered Locus Names:BSU03170
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 324324Uncharacterized HTH-type transcriptional regulator YcgKPRO_0000359947Add
BLAST

Proteomic databases

PaxDbiP94387.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100001773.

Structurei

3D structure databases

ProteinModelPortaliP94387.
SMRiP94387. Positions 1-313.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 5858HTH lysR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105C5Q. Bacteria.
ENOG410XNR2. LUCA.
HOGENOMiHOG000233514.
InParanoidiP94387.
KOiK04761.
OMAiSRFQSPQ.
PhylomeDBiP94387.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P94387-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDIKVMEYAA EIARRQSFTK AAEHLHIAQP SLSQQIKKLE AELGLTLFHR
60 70 80 90 100
SHGSVTLTPH GRRFIEKAED IIRSRDDLLR EMQERSQGIG HKLSIGIPAV
110 120 130 140 150
TGRYLFPPLL KQFLARYPHV EVQLVEKDPV SLEKMTAKGE VDLSVLSLPI
160 170 180 190 200
EDERLSITPL LTEPVVLAVP KEKQRWMPPE LVALIEKALE EDEGRQPCVP
210 220 230 240 250
IDMVRNVPFI LLKEGFGFRR TVLDLCAESG FKPNAAFKTS HIETAQSLVA
260 270 280 290 300
NGLGVTMAPN MVRRDKDPGV IYLSIQSAPS RTLVFVFLKN RYVSLTAQAF
310 320
MELSRESLKQ TFDEGCLGNK DENI
Length:324
Mass (Da):36,450
Last modified:June 16, 2009 - v2
Checksum:i8ADDB22FA86609D8
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti23 – 231E → V in BAA08951 (PubMed:8969502).Curated
Sequence conflicti114 – 1141L → V in BAA08951 (PubMed:8969502).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50453 Genomic DNA. Translation: BAA08951.1.
AL009126 Genomic DNA. Translation: CAB12111.2.
PIRiF69758.
RefSeqiNP_388199.2. NC_000964.3.
WP_003246430.1. NZ_JNCM01000030.1.

Genome annotation databases

EnsemblBacteriaiCAB12111; CAB12111; BSU03170.
GeneIDi938340.
KEGGibsu:BSU03170.
PATRICi18972193. VBIBacSub10457_0325.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50453 Genomic DNA. Translation: BAA08951.1.
AL009126 Genomic DNA. Translation: CAB12111.2.
PIRiF69758.
RefSeqiNP_388199.2. NC_000964.3.
WP_003246430.1. NZ_JNCM01000030.1.

3D structure databases

ProteinModelPortaliP94387.
SMRiP94387. Positions 1-313.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100001773.

Proteomic databases

PaxDbiP94387.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12111; CAB12111; BSU03170.
GeneIDi938340.
KEGGibsu:BSU03170.
PATRICi18972193. VBIBacSub10457_0325.

Phylogenomic databases

eggNOGiENOG4105C5Q. Bacteria.
ENOG410XNR2. LUCA.
HOGENOMiHOG000233514.
InParanoidiP94387.
KOiK04761.
OMAiSRFQSPQ.
PhylomeDBiP94387.

Enzyme and pathway databases

BioCyciBSUB:BSU03170-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYCGK_BACSU
AccessioniPrimary (citable) accession number: P94387
Secondary accession number(s): Q797Q8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: June 16, 2009
Last modified: September 7, 2016
This is version 101 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.