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Protein
Submitted name:

Histone H1

Gene

His1-3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • nucleosomal DNA binding Source: TAIR

GO - Biological processi

  • nucleosome assembly Source: InterPro
  • response to water deprivation Source: TAIR
Complete GO annotation...

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Histone H1Imported
Submitted name:
Histone H1-3Imported
Submitted name:
Putative histone H1 proteinImported
Gene namesi
Name:His1-3Imported
Synonyms:HIS1-3Imported
Ordered Locus Names:At2g18050Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G18050.

Subcellular locationi

  • Chromosome SAAS annotation
  • Nucleus UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

ChromosomeUniRule annotationSAAS annotation, NucleusUniRule annotationSAAS annotation

Expressioni

Gene expression databases

ExpressionAtlasiP94109. baseline and differential.

Interactioni

GO - Molecular functioni

  • nucleosomal DNA binding Source: TAIR

Protein-protein interaction databases

STRINGi3702.AT2G18050.1.

Structurei

3D structure databases

SMRiP94109. Positions 23-92.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini23 – 9371H15 (linker histone H1/H5 globular)InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the histone H1/H5 family.UniRule annotationSAAS annotation
Contains H15 (linker histone H1/H5 globular) domain.SAAS annotation

Phylogenomic databases

eggNOGiENOG410J1R8. Eukaryota.
ENOG410XWIM. LUCA.
HOGENOMiHOG000241672.
KOiK11275.
OMAiGCEAKMA.
PhylomeDBiP94109.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005818. Histone_H1/H5_H15.
IPR005819. Histone_H5.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00538. Linker_histone. 1 hit.
[Graphical view]
PRINTSiPR00624. HISTONEH5.
SMARTiSM00526. H15. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51504. H15. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P94109-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEDKILKKT PAAKKPRKPK TTTHPPYFQM IKEALMVLKE KNGSSPYAIA
60 70 80 90 100
KKIEEKHKSL LPESFRKTLS LQLKNSVAKG KLVKIRASYK LSDTTKMITR
110 120 130 140 150
QQDKKNKKNM KQEDKEITKR TRSSSTRPKK TVSVNKQEKK RKVKKARQPK
160
SIKSSVGKKK AMKASAA
Length:167
Mass (Da):19,049
Last modified:May 1, 1997 - v1
Checksum:i33CBF22BBE15D918
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U72241 Genomic DNA. Translation: AAC49789.1.
U73781 mRNA. Translation: AAC49790.1.
AC006201 Genomic DNA. Translation: AAD20121.1.
AY045797 mRNA. Translation: AAK76471.1.
AY079414 mRNA. Translation: AAL85145.1.
AY084603 mRNA. Translation: AAM61167.1.
CP002685 Genomic DNA. Translation: AEC06720.1.
PIRiF84559.
RefSeqiNP_179396.1. NM_127361.2.
UniGeneiAt.24439.

Genome annotation databases

EnsemblPlantsiAT2G18050.1; AT2G18050.1; AT2G18050.
GeneIDi816317.
GrameneiAT2G18050.1; AT2G18050.1; AT2G18050.
KEGGiath:AT2G18050.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U72241 Genomic DNA. Translation: AAC49789.1.
U73781 mRNA. Translation: AAC49790.1.
AC006201 Genomic DNA. Translation: AAD20121.1.
AY045797 mRNA. Translation: AAK76471.1.
AY079414 mRNA. Translation: AAL85145.1.
AY084603 mRNA. Translation: AAM61167.1.
CP002685 Genomic DNA. Translation: AEC06720.1.
PIRiF84559.
RefSeqiNP_179396.1. NM_127361.2.
UniGeneiAt.24439.

3D structure databases

SMRiP94109. Positions 23-92.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G18050.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G18050.1; AT2G18050.1; AT2G18050.
GeneIDi816317.
GrameneiAT2G18050.1; AT2G18050.1; AT2G18050.
KEGGiath:AT2G18050.

Organism-specific databases

TAIRiAT2G18050.

Phylogenomic databases

eggNOGiENOG410J1R8. Eukaryota.
ENOG410XWIM. LUCA.
HOGENOMiHOG000241672.
KOiK11275.
OMAiGCEAKMA.
PhylomeDBiP94109.

Gene expression databases

ExpressionAtlasiP94109. baseline and differential.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005818. Histone_H1/H5_H15.
IPR005819. Histone_H5.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00538. Linker_histone. 1 hit.
[Graphical view]
PRINTSiPR00624. HISTONEH5.
SMARTiSM00526. H15. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51504. H15. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Ascenzi R.A., Gantt J.S.
    Submitted (SEP-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ColumbiaImported.
  2. Ascenzi R.A., Gantt J.S.
    Submitted (OCT-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ColumbiaImported.
  3. "A drought-stress-inducible histone gene in Arabidopsis thaliana is a member of a distinct class of plant linker histone variants."
    Ascenzi R., Gantt J.S.
    Plant Mol. Biol. 34:629-641(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ColumbiaImported.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  5. Cited for: NUCLEOTIDE SEQUENCE.
  6. Cited for: NUCLEOTIDE SEQUENCE.
  7. "Full-length messenger RNA sequences greatly improve genome annotation."
    Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N., Feldmann K.A., Flavell R.B., White O., Salzberg S.L.
    Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  8. "Arabidopsis Open Reading Frame (ORF) Clones."
    Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Etgu P., Lee J.M., Toriumi M., Yu G., Brooks S., Chao Q., Chen H., Karlin-Neumann G., Kim C., Lam B., Miranda M., Nguyen M., Palm C.J.
    , Shinn P., Southwick A., Davis R.W., Ecker J.R., Theologis A.
    Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  9. Town C.D., Kaul S.
    Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  10. Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  11. "Features of Arabidopsis genes and genome discovered using full-length cDNAs."
    Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.
    Plant Mol. Biol. 60:71-87(2006)
    Cited for: NUCLEOTIDE SEQUENCE.
  12. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  13. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiP94109_ARATH
AccessioniPrimary (citable) accession number: P94109
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 1997
Last sequence update: May 1, 1997
Last modified: May 11, 2016
This is version 136 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.