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Protein

Germin-like protein subfamily 3 member 3

Gene

GER3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi103ManganeseBy similarity1
Metal bindingi105ManganeseBy similarity1
Metal bindingi110ManganeseBy similarity1
Metal bindingi149ManganeseBy similarity1

GO - Molecular functioni

GO - Biological processi

  • response to cold Source: TAIR
  • response to cytokinin Source: TAIR

Keywordsi

LigandManganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Germin-like protein subfamily 3 member 3
Short name:
AtGER3
Short name:
AtGLP2
Gene namesi
Name:GER3
Synonyms:GLP2A, GLP2B, GLP3, GLP3A, GLP3B
Ordered Locus Names:At5g20630
ORF Names:T1M15.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G20630
TAIRilocus:2180444 AT5G20630

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Apoplast, Secreted

Pathology & Biotechi

Protein family/group databases

Allergomei779 Ara t GLP

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Add BLAST20
ChainiPRO_000001082821 – 211Germin-like protein subfamily 3 member 3Add BLAST191

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi26 ↔ 41By similarity
Glycosylationi62N-linked (GlcNAc...) asparagineSequence analysis1
Modified residuei140PhosphoserineCombined sources1

Keywords - PTMi

Disulfide bond, Glycoprotein, Phosphoprotein

Proteomic databases

PaxDbiP94072
PRIDEiP94072

PTM databases

iPTMnetiP94072

Expressioni

Tissue specificityi

Expressed in leaves and flowers.

Inductioni

Expressed with a circadian rhythm, with peak expression at the beginning of the night.

Gene expression databases

ExpressionAtlasiP94072 baseline and differential
GenevisibleiP94072 AT

Interactioni

Subunit structurei

Oligomer (believed to be a pentamer but probably hexamer).By similarity

Protein-protein interaction databases

BioGridi17460, 3 interactors
STRINGi3702.AT5G20630.1

Structurei

3D structure databases

ProteinModelPortaliP94072
SMRiP94072
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the germin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410II9Z Eukaryota
ENOG410YB6M LUCA
HOGENOMiHOG000235000
InParanoidiP94072
OMAiHFQINSG
OrthoDBiEOG09360OKZ
PhylomeDBiP94072

Family and domain databases

Gene3Di2.60.120.10, 1 hit
InterProiView protein in InterPro
IPR006045 Cupin_1
IPR001929 Germin
IPR019780 Germin_Mn-BS
IPR014710 RmlC-like_jellyroll
IPR011051 RmlC_Cupin_sf
PfamiView protein in Pfam
PF00190 Cupin_1, 1 hit
PRINTSiPR00325 GERMIN
SMARTiView protein in SMART
SM00835 Cupin_1, 1 hit
SUPFAMiSSF51182 SSF51182, 1 hit
PROSITEiView protein in PROSITE
PS00725 GERMIN, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P94072-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKMIIQIFFI ISLISTISFA SVQDFCVADP KGPQSPSGYS CKNPDQVTEN
60 70 80 90 100
DFAFTGLGTA GNTSNIIKAA VTPAFAPAYA GINGLGVSLA RLDLAGGGVI
110 120 130 140 150
PLHTHPGASE VLVVIQGTIC AGFISSANKV YLKTLNRGDS MVFPQGLLHF
160 170 180 190 200
QLNSGKGPAL AFVAFGSSSP GLQILPFALF ANDLPSELVE ATTFLSDAEV
210
KKLKGVLGGT N
Length:211
Mass (Da):21,836
Last modified:May 1, 1997 - v1
Checksum:iBA0591DC005BFA24
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti59T → K in AAB51581 (PubMed:9869400).Curated1
Sequence conflicti59T → K in AAB51566 (PubMed:9869400).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y12673 mRNA Translation: CAA73213.1
D89374 Genomic DNA Translation: BAA77208.1
U75188 mRNA Translation: AAB51566.1
U75193 mRNA Translation: AAB51571.1
U75195 mRNA Translation: AAB51573.1
U75203 mRNA Translation: AAB51581.1
U75205 mRNA Translation: AAB51583.1
AJ132237 Genomic DNA Translation: CAB54516.1
AF296832 Genomic DNA No translation available.
CP002688 Genomic DNA Translation: AED92868.1
AY039516 mRNA Translation: AAK62573.1
AY055786 mRNA Translation: AAL06953.1
RefSeqiNP_197563.1, NM_122070.3
UniGeneiAt.22582
At.72030

Genome annotation databases

EnsemblPlantsiAT5G20630.1; AT5G20630.1; AT5G20630
GeneIDi832185
GrameneiAT5G20630.1; AT5G20630.1; AT5G20630
KEGGiath:AT5G20630

Similar proteinsi

Entry informationi

Entry nameiGL33_ARATH
AccessioniPrimary (citable) accession number: P94072
Secondary accession number(s): P94028
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 29, 2001
Last sequence update: May 1, 1997
Last modified: April 25, 2018
This is version 136 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health