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Protein

Germin-like protein subfamily 3 member 3

Gene

GER3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi103ManganeseBy similarity1
Metal bindingi105ManganeseBy similarity1
Metal bindingi110ManganeseBy similarity1
Metal bindingi149ManganeseBy similarity1

GO - Molecular functioni

GO - Biological processi

  • oxalate metabolic process Source: GO_Central
  • response to cold Source: TAIR
  • response to cytokinin Source: TAIR
Complete GO annotation...

Keywords - Ligandi

Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Germin-like protein subfamily 3 member 3
Short name:
AtGER3
Short name:
AtGLP2
Gene namesi
Name:GER3
Synonyms:GLP2A, GLP2B, GLP3, GLP3A, GLP3B
Ordered Locus Names:At5g20630
ORF Names:T1M15.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G20630.

Subcellular locationi

GO - Cellular componenti

  • apoplast Source: TAIR
  • cell wall Source: TAIR
  • extracellular matrix Source: TAIR
  • nucleus Source: TAIR
  • plant-type cell wall Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Apoplast, Secreted

Pathology & Biotechi

Protein family/group databases

Allergomei779. Ara t GLP.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Add BLAST20
ChainiPRO_000001082821 – 211Germin-like protein subfamily 3 member 3Add BLAST191

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi26 ↔ 41By similarity
Glycosylationi62N-linked (GlcNAc...)Sequence analysis1
Modified residuei140PhosphoserineCombined sources1

Keywords - PTMi

Disulfide bond, Glycoprotein, Phosphoprotein

Proteomic databases

PaxDbiP94072.
PRIDEiP94072.

PTM databases

iPTMnetiP94072.

Expressioni

Tissue specificityi

Expressed in leaves and flowers.

Inductioni

Expressed with a circadian rhythm, with peak expression at the beginning of the night.

Gene expression databases

GenevisibleiP94072. AT.

Interactioni

Subunit structurei

Oligomer (believed to be a pentamer but probably hexamer).By similarity

Protein-protein interaction databases

BioGridi17460. 3 interactors.
STRINGi3702.AT5G20630.1.

Structurei

3D structure databases

ProteinModelPortaliP94072.
SMRiP94072.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the germin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410II9Z. Eukaryota.
ENOG410YB6M. LUCA.
HOGENOMiHOG000235000.
InParanoidiP94072.
OMAiHFQINSG.
OrthoDBiEOG09360OKZ.
PhylomeDBiP94072.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR006045. Cupin_1.
IPR001929. Germin.
IPR019780. Germin_Mn-BS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 1 hit.
[Graphical view]
PRINTSiPR00325. GERMIN.
SMARTiSM00835. Cupin_1. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00725. GERMIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P94072-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKMIIQIFFI ISLISTISFA SVQDFCVADP KGPQSPSGYS CKNPDQVTEN
60 70 80 90 100
DFAFTGLGTA GNTSNIIKAA VTPAFAPAYA GINGLGVSLA RLDLAGGGVI
110 120 130 140 150
PLHTHPGASE VLVVIQGTIC AGFISSANKV YLKTLNRGDS MVFPQGLLHF
160 170 180 190 200
QLNSGKGPAL AFVAFGSSSP GLQILPFALF ANDLPSELVE ATTFLSDAEV
210
KKLKGVLGGT N
Length:211
Mass (Da):21,836
Last modified:May 1, 1997 - v1
Checksum:iBA0591DC005BFA24
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti59T → K in AAB51581 (PubMed:9869400).Curated1
Sequence conflicti59T → K in AAB51566 (PubMed:9869400).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y12673 mRNA. Translation: CAA73213.1.
D89374 Genomic DNA. Translation: BAA77208.1.
U75188 mRNA. Translation: AAB51566.1.
U75193 mRNA. Translation: AAB51571.1.
U75195 mRNA. Translation: AAB51573.1.
U75203 mRNA. Translation: AAB51581.1.
U75205 mRNA. Translation: AAB51583.1.
AJ132237 Genomic DNA. Translation: CAB54516.1.
AF296832 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED92868.1.
AY039516 mRNA. Translation: AAK62573.1.
AY055786 mRNA. Translation: AAL06953.1.
RefSeqiNP_197563.1. NM_122070.3.
UniGeneiAt.22582.
At.72030.

Genome annotation databases

EnsemblPlantsiAT5G20630.1; AT5G20630.1; AT5G20630.
GeneIDi832185.
GrameneiAT5G20630.1; AT5G20630.1; AT5G20630.
KEGGiath:AT5G20630.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y12673 mRNA. Translation: CAA73213.1.
D89374 Genomic DNA. Translation: BAA77208.1.
U75188 mRNA. Translation: AAB51566.1.
U75193 mRNA. Translation: AAB51571.1.
U75195 mRNA. Translation: AAB51573.1.
U75203 mRNA. Translation: AAB51581.1.
U75205 mRNA. Translation: AAB51583.1.
AJ132237 Genomic DNA. Translation: CAB54516.1.
AF296832 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED92868.1.
AY039516 mRNA. Translation: AAK62573.1.
AY055786 mRNA. Translation: AAL06953.1.
RefSeqiNP_197563.1. NM_122070.3.
UniGeneiAt.22582.
At.72030.

3D structure databases

ProteinModelPortaliP94072.
SMRiP94072.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi17460. 3 interactors.
STRINGi3702.AT5G20630.1.

Protein family/group databases

Allergomei779. Ara t GLP.

PTM databases

iPTMnetiP94072.

Proteomic databases

PaxDbiP94072.
PRIDEiP94072.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G20630.1; AT5G20630.1; AT5G20630.
GeneIDi832185.
GrameneiAT5G20630.1; AT5G20630.1; AT5G20630.
KEGGiath:AT5G20630.

Organism-specific databases

TAIRiAT5G20630.

Phylogenomic databases

eggNOGiENOG410II9Z. Eukaryota.
ENOG410YB6M. LUCA.
HOGENOMiHOG000235000.
InParanoidiP94072.
OMAiHFQINSG.
OrthoDBiEOG09360OKZ.
PhylomeDBiP94072.

Miscellaneous databases

PROiP94072.

Gene expression databases

GenevisibleiP94072. AT.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR006045. Cupin_1.
IPR001929. Germin.
IPR019780. Germin_Mn-BS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 1 hit.
[Graphical view]
PRINTSiPR00325. GERMIN.
SMARTiSM00835. Cupin_1. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00725. GERMIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGL33_ARATH
AccessioniPrimary (citable) accession number: P94072
Secondary accession number(s): P94028
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 29, 2001
Last sequence update: May 1, 1997
Last modified: November 30, 2016
This is version 129 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.