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Protein

Germin-like protein subfamily 3 member 1

Gene

GLP1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Miscellaneous

Is the most highly expressed of the GLP genes.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi100ManganeseBy similarity1
Metal bindingi102ManganeseBy similarity1
Metal bindingi107ManganeseBy similarity1
Metal bindingi146ManganeseBy similarity1

GO - Molecular functioni

Keywordsi

LigandManganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Germin-like protein subfamily 3 member 1
Short name:
At-GERM1
Short name:
AtGER1
Short name:
AtGLP1
Gene namesi
Name:GLP1
Synonyms:GER1, GLP3
Ordered Locus Names:At1g72610
ORF Names:F28P22.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G72610.
TAIRilocus:2030205. AT1G72610.

Subcellular locationi

GO - Cellular componenti

  • apoplast Source: UniProtKB-SubCell
  • cell wall Source: GO_Central
  • extracellular matrix Source: TAIR

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 18Sequence analysisAdd BLAST18
ChainiPRO_000001082619 – 208Germin-like protein subfamily 3 member 1Add BLAST190

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi23 ↔ 38By similarity
Glycosylationi59N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiP94040.
PRIDEiP94040.

Expressioni

Tissue specificityi

Expressed during germination, and also in green shoots, etiolated seedlings and whole seedlings.

Gene expression databases

ExpressionAtlasiP94040. baseline and differential.
GenevisibleiP94040. AT.

Interactioni

Subunit structurei

May not form oligomer.

Protein-protein interaction databases

STRINGi3702.AT1G72610.1.

Structurei

3D structure databases

ProteinModelPortaliP94040.
SMRiP94040.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the germin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410II9Z. Eukaryota.
ENOG410YB6M. LUCA.
HOGENOMiHOG000235000.
OMAiTTFLDAT.
OrthoDBiEOG09360OKZ.
PhylomeDBiP94040.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiView protein in InterPro
IPR006045. Cupin_1.
IPR001929. Germin.
IPR019780. Germin_Mn-BS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
PfamiView protein in Pfam
PF00190. Cupin_1. 1 hit.
PRINTSiPR00325. GERMIN.
SMARTiView protein in SMART
SM00835. Cupin_1. 1 hit.
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiView protein in PROSITE
PS00725. GERMIN. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P94040-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLRTIFLLSL LFALSNASVQ DFCVANLKRA ETPAGYPCIR PIHVKATDFV
60 70 80 90 100
FSGLGTPGNT TNIINAAVTP AFAAQFPGLN GLGLSTARLD LAPKGVIPMH
110 120 130 140 150
THPGASEVLF VLTGSITAGF VSSANAVYVQ TLKPGQVMVF PQGLLHFQIN
160 170 180 190 200
AGKSSASAVV TFNSANPGLQ ILDFALFANS LPTELVVGTT FLDATTVKKL

KGVLGGTG
Length:208
Mass (Da):21,559
Last modified:May 1, 1997 - v1
Checksum:iE496DF08E5015844
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti13A → G in CAA63014 (PubMed:9349269).Curated1
Sequence conflicti83G → A in CAA63014 (PubMed:9349269).Curated1
Sequence conflicti167P → R in CAA63014 (PubMed:9349269).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X91921 mRNA. Translation: CAA63014.1.
D89055 Genomic DNA. Translation: BAA77207.1.
AF090733 Genomic DNA. Translation: AAD05223.1.
U75189 mRNA. Translation: AAB51567.1.
U75190 mRNA. Translation: AAB51568.1.
U75196 mRNA. Translation: AAB51574.1.
U75197 mRNA. Translation: AAB51575.1.
U75201 mRNA. Translation: AAB51579.1.
U75206 mRNA. Translation: AAB51584.1.
U95034 mRNA. Translation: AAB51750.1.
U95035 mRNA. Translation: AAB51751.1.
AC010926 Genomic DNA. Translation: AAG51848.1.
CP002684 Genomic DNA. Translation: AEE35348.1.
AY085951 mRNA. Translation: AAM63161.1.
PIRiF96750.
RefSeqiNP_177405.1. NM_105920.2.
UniGeneiAt.10971.
At.23875.
At.35746.
At.43326.
At.71528.
At.71882.
At.75222.

Genome annotation databases

EnsemblPlantsiAT1G72610.1; AT1G72610.1; AT1G72610.
GeneIDi843593.
GrameneiAT1G72610.1; AT1G72610.1; AT1G72610.
KEGGiath:AT1G72610.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiGL31_ARATH
AccessioniPrimary (citable) accession number: P94040
Secondary accession number(s): O04751, Q96265
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 29, 2001
Last sequence update: May 1, 1997
Last modified: May 10, 2017
This is version 127 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families