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Protein

Germin-like protein subfamily 2 member 1

Gene

GLP4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi109ManganeseBy similarity1
Metal bindingi111ManganeseBy similarity1
Metal bindingi116ManganeseBy similarity1
Metal bindingi155ManganeseBy similarity1

GO - Molecular functioni

GO - Biological processi

  • oxalate metabolic process Source: GO_Central
  • plasmodesmata-mediated intercellular transport Source: TAIR
  • regulation of root development Source: TAIR
  • response to cold Source: TAIR
Complete GO annotation...

Keywords - Ligandi

Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Germin-like protein subfamily 2 member 1
Gene namesi
Name:GLP4
Synonyms:GLP5
Ordered Locus Names:At1g09560
ORF Names:F14J9.22
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G09560.

Subcellular locationi

GO - Cellular componenti

  • apoplast Source: UniProtKB-SubCell
  • cell wall Source: TAIR
  • nucleus Source: TAIR
  • plasmodesma Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_000001082122 – 219Germin-like protein subfamily 2 member 1Add BLAST198

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi32 ↔ 47By similarity
Glycosylationi70N-linked (GlcNAc...)Sequence analysis1

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiP94014.
PRIDEiP94014.

Expressioni

Gene expression databases

GenevisibleiP94014. AT.

Interactioni

Subunit structurei

Oligomer (believed to be a pentamer but probably hexamer).By similarity

Protein-protein interaction databases

STRINGi3702.AT1G09560.1.

Structurei

3D structure databases

ProteinModelPortaliP94014.
SMRiP94014.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the germin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IUIS. Eukaryota.
ENOG410YCIH. LUCA.
HOGENOMiHOG000235000.
InParanoidiP94014.
OMAiRTISQGD.
OrthoDBiEOG09360LVG.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR006045. Cupin_1.
IPR001929. Germin.
IPR019780. Germin_Mn-BS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 1 hit.
[Graphical view]
PRINTSiPR00325. GERMIN.
SMARTiSM00835. Cupin_1. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00725. GERMIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P94014-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASPTLTLLL LLTTVSFFIS SSADPDMLQD LCVADLPSGI KINGFPCKDA
60 70 80 90 100
ATVTSADFFS QGLAKPGLTN NTFGALVTGA NVMTIPGLNT LGVSLSRIDY
110 120 130 140 150
APGGLNPPHT HPRATEVVFV LEGTLDVGFL TTANKLISQS LKKGDVFAFP
160 170 180 190 200
KGLVHFQKNN GDVPASVIAA FNSQLPGTQS LGATLFGSTP PVPDNILAQA
210
FQTSPGTVKH IKSKFQPKK
Length:219
Mass (Da):22,868
Last modified:January 25, 2012 - v2
Checksum:iA4B659CBB606C968
GO

Sequence cautioni

The sequence AAB51569 differs from that shown. Sequencing errors.Curated
The sequence AAB51576 differs from that shown. Sequencing errors.Curated
The sequence AAB51577 differs from that shown. Sequencing errors.Curated
The sequence AAB51578 differs from that shown. Sequencing errors.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U75191 mRNA. Translation: AAB51569.1. Sequence problems.
U75198 mRNA. Translation: AAB51576.1. Sequence problems.
U75199 mRNA. Translation: AAB51577.1. Sequence problems.
U75200 mRNA. Translation: AAB51578.1. Sequence problems.
AC003970 Genomic DNA. Translation: AAC33216.1.
CP002684 Genomic DNA. Translation: AEE28461.1.
AF326875 mRNA. Translation: AAG41457.1.
AF324678 mRNA. Translation: AAG40029.1.
AF339696 mRNA. Translation: AAK00378.1.
PIRiC86229.
RefSeqiNP_172427.1. NM_100827.4.
UniGeneiAt.11328.
At.70044.

Genome annotation databases

EnsemblPlantsiAT1G09560.1; AT1G09560.1; AT1G09560.
GeneIDi837482.
GrameneiAT1G09560.1; AT1G09560.1; AT1G09560.
KEGGiath:AT1G09560.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U75191 mRNA. Translation: AAB51569.1. Sequence problems.
U75198 mRNA. Translation: AAB51576.1. Sequence problems.
U75199 mRNA. Translation: AAB51577.1. Sequence problems.
U75200 mRNA. Translation: AAB51578.1. Sequence problems.
AC003970 Genomic DNA. Translation: AAC33216.1.
CP002684 Genomic DNA. Translation: AEE28461.1.
AF326875 mRNA. Translation: AAG41457.1.
AF324678 mRNA. Translation: AAG40029.1.
AF339696 mRNA. Translation: AAK00378.1.
PIRiC86229.
RefSeqiNP_172427.1. NM_100827.4.
UniGeneiAt.11328.
At.70044.

3D structure databases

ProteinModelPortaliP94014.
SMRiP94014.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G09560.1.

Proteomic databases

PaxDbiP94014.
PRIDEiP94014.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G09560.1; AT1G09560.1; AT1G09560.
GeneIDi837482.
GrameneiAT1G09560.1; AT1G09560.1; AT1G09560.
KEGGiath:AT1G09560.

Organism-specific databases

TAIRiAT1G09560.

Phylogenomic databases

eggNOGiENOG410IUIS. Eukaryota.
ENOG410YCIH. LUCA.
HOGENOMiHOG000235000.
InParanoidiP94014.
OMAiRTISQGD.
OrthoDBiEOG09360LVG.

Miscellaneous databases

PROiP94014.

Gene expression databases

GenevisibleiP94014. AT.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR006045. Cupin_1.
IPR001929. Germin.
IPR019780. Germin_Mn-BS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 1 hit.
[Graphical view]
PRINTSiPR00325. GERMIN.
SMARTiSM00835. Cupin_1. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00725. GERMIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGL21_ARATH
AccessioniPrimary (citable) accession number: P94014
Secondary accession number(s): F4I108, O80538, P94097
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 29, 2001
Last sequence update: January 25, 2012
Last modified: November 30, 2016
This is version 120 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.