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Protein

Germin-like protein subfamily 2 member 1

Gene

GLP4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi109ManganeseBy similarity1
Metal bindingi111ManganeseBy similarity1
Metal bindingi116ManganeseBy similarity1
Metal bindingi155ManganeseBy similarity1

GO - Molecular functioni

GO - Biological processi

  • plasmodesmata-mediated intercellular transport Source: TAIR
  • regulation of root development Source: TAIR
  • response to cold Source: TAIR

Keywordsi

LigandManganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Germin-like protein subfamily 2 member 1
Gene namesi
Name:GLP4
Synonyms:GLP5
Ordered Locus Names:At1g09560
ORF Names:F14J9.22
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G09560
TAIRilocus:2012260 AT1G09560

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_000001082122 – 219Germin-like protein subfamily 2 member 1Add BLAST198

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi32 ↔ 47By similarity
Glycosylationi70N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiP94014
PRIDEiP94014

Expressioni

Gene expression databases

ExpressionAtlasiP94014 baseline and differential
GenevisibleiP94014 AT

Interactioni

Subunit structurei

Oligomer (believed to be a pentamer but probably hexamer).By similarity

Protein-protein interaction databases

STRINGi3702.AT1G09560.1

Structurei

3D structure databases

ProteinModelPortaliP94014
SMRiP94014
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the germin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IUIS Eukaryota
ENOG410YCIH LUCA
HOGENOMiHOG000235000
InParanoidiP94014
OMAiTCKENIT
OrthoDBiEOG09360LVG

Family and domain databases

Gene3Di2.60.120.10, 1 hit
InterProiView protein in InterPro
IPR006045 Cupin_1
IPR001929 Germin
IPR019780 Germin_Mn-BS
IPR014710 RmlC-like_jellyroll
IPR011051 RmlC_Cupin_sf
PfamiView protein in Pfam
PF00190 Cupin_1, 1 hit
PRINTSiPR00325 GERMIN
SMARTiView protein in SMART
SM00835 Cupin_1, 1 hit
SUPFAMiSSF51182 SSF51182, 1 hit
PROSITEiView protein in PROSITE
PS00725 GERMIN, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P94014-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASPTLTLLL LLTTVSFFIS SSADPDMLQD LCVADLPSGI KINGFPCKDA
60 70 80 90 100
ATVTSADFFS QGLAKPGLTN NTFGALVTGA NVMTIPGLNT LGVSLSRIDY
110 120 130 140 150
APGGLNPPHT HPRATEVVFV LEGTLDVGFL TTANKLISQS LKKGDVFAFP
160 170 180 190 200
KGLVHFQKNN GDVPASVIAA FNSQLPGTQS LGATLFGSTP PVPDNILAQA
210
FQTSPGTVKH IKSKFQPKK
Length:219
Mass (Da):22,868
Last modified:January 25, 2012 - v2
Checksum:iA4B659CBB606C968
GO

Sequence cautioni

The sequence AAB51569 differs from that shown. Sequencing errors.Curated
The sequence AAB51576 differs from that shown. Sequencing errors.Curated
The sequence AAB51577 differs from that shown. Sequencing errors.Curated
The sequence AAB51578 differs from that shown. Sequencing errors.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U75191 mRNA Translation: AAB51569.1 Sequence problems.
U75198 mRNA Translation: AAB51576.1 Sequence problems.
U75199 mRNA Translation: AAB51577.1 Sequence problems.
U75200 mRNA Translation: AAB51578.1 Sequence problems.
AC003970 Genomic DNA Translation: AAC33216.1
CP002684 Genomic DNA Translation: AEE28461.1
AF326875 mRNA Translation: AAG41457.1
AF324678 mRNA Translation: AAG40029.1
AF339696 mRNA Translation: AAK00378.1
PIRiC86229
RefSeqiNP_172427.1, NM_100827.4
UniGeneiAt.11328
At.70044

Genome annotation databases

EnsemblPlantsiAT1G09560.1; AT1G09560.1; AT1G09560
GeneIDi837482
GrameneiAT1G09560.1; AT1G09560.1; AT1G09560
KEGGiath:AT1G09560

Similar proteinsi

Entry informationi

Entry nameiGL21_ARATH
AccessioniPrimary (citable) accession number: P94014
Secondary accession number(s): F4I108, O80538, P94097
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 29, 2001
Last sequence update: January 25, 2012
Last modified: April 25, 2018
This is version 129 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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