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P93746

- EC1_ARATH

UniProt

P93746 - EC1_ARATH

Protein

EC protein homolog 1

Gene

At2g42000

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    Binds 5 molecules of zinc. May have a role in Zn2+ homeostasis during embryogenesis By similarity.By similarity

    GO - Molecular functioni

    1. zinc ion binding Source: InterPro

    Keywords - Ligandi

    Metal-binding, Metal-thiolate cluster, Zinc

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    EC protein homolog 1
    Gene namesi
    Ordered Locus Names:At2g42000
    ORF Names:T6D20.11
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 2

    Organism-specific databases

    TAIRiAT2G42000.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 8484EC protein homolog 1PRO_0000197423Add
    BLAST

    Expressioni

    Gene expression databases

    GenevestigatoriP93746.

    Structurei

    3D structure databases

    ProteinModelPortaliP93746.
    SMRiP93746. Positions 11-39.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiNOG304685.
    HOGENOMiHOG000243560.
    InParanoidiP93746.
    PhylomeDBiP93746.

    Family and domain databases

    InterProiIPR000316. Metallthion_15.
    [Graphical view]
    PfamiPF02068. Metallothio_PEC. 1 hit.
    [Graphical view]
    PRINTSiPR00877. MTPLANTPEC.

    Sequencei

    Sequence statusi: Complete.

    This entry describes 1 isoform i produced by alternative splicing. Align

    Note: A number of isoforms are produced. According to EST sequences.

    Isoform 1 (identifier: P93746-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MADTGKGSSV AGCNDSCGCP SPCPGGNSCR CRMREASAGD QGHMVCPCGE   50
    HCGCNPCNCP KTQTQTSAKG CTCGEGCTCA SCAT 84
    Length:84
    Mass (Da):8,290
    Last modified:November 1, 1997 - v2
    Checksum:i09D76F26CDF87676
    GO

    Sequence cautioni

    The sequence AAB63543.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.
    The sequence AEC10060.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti68 – 681A → D in CAA83560. (PubMed:8580968)Curated
    Sequence conflicti83 – 831A → D in CAA83560. (PubMed:8580968)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U90439 Genomic DNA. Translation: AAB63543.1. Different initiation.
    CP002685 Genomic DNA. Translation: AEC10060.1. Different initiation.
    Z32602 mRNA. Translation: CAA83560.1.
    PIRiG84848.
    RefSeqiNP_181731.1. NM_129764.1.
    UniGeneiAt.42759.

    Genome annotation databases

    EnsemblPlantsiAT2G42000.1; AT2G42000.1; AT2G42000.
    AT2G42000.2; AT2G42000.2; AT2G42000.
    GeneIDi818800.
    KEGGiath:AT2G42000.

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U90439 Genomic DNA. Translation: AAB63543.1 . Different initiation.
    CP002685 Genomic DNA. Translation: AEC10060.1 . Different initiation.
    Z32602 mRNA. Translation: CAA83560.1 .
    PIRi G84848.
    RefSeqi NP_181731.1. NM_129764.1.
    UniGenei At.42759.

    3D structure databases

    ProteinModelPortali P93746.
    SMRi P93746. Positions 11-39.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT2G42000.1 ; AT2G42000.1 ; AT2G42000 .
    AT2G42000.2 ; AT2G42000.2 ; AT2G42000 .
    GeneIDi 818800.
    KEGGi ath:AT2G42000.

    Organism-specific databases

    TAIRi AT2G42000.

    Phylogenomic databases

    eggNOGi NOG304685.
    HOGENOMi HOG000243560.
    InParanoidi P93746.
    PhylomeDBi P93746.

    Gene expression databases

    Genevestigatori P93746.

    Family and domain databases

    InterProi IPR000316. Metallthion_15.
    [Graphical view ]
    Pfami PF02068. Metallothio_PEC. 1 hit.
    [Graphical view ]
    PRINTSi PR00877. MTPLANTPEC.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 3-84.
      Strain: cv. Columbia.
      Tissue: Dry seed.

    Entry informationi

    Entry nameiEC1_ARATH
    AccessioniPrimary (citable) accession number: P93746
    Secondary accession number(s): F4ILY8, Q42258
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 88 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. Metallothioneins
      Classification of metallothioneins and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3