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Protein

EC protein homolog 1

Gene

At2g42000

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Binds 5 molecules of zinc. May have a role in Zn2+ homeostasis during embryogenesis (By similarity).By similarity

GO - Molecular functioni

  1. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Metal-thiolate cluster, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
EC protein homolog 1
Gene namesi
Ordered Locus Names:At2g42000
ORF Names:T6D20.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G42000.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8484EC protein homolog 1PRO_0000197423Add
BLAST

Expressioni

Gene expression databases

ExpressionAtlasiP93746. differential.
GenevestigatoriP93746.

Structurei

3D structure databases

ProteinModelPortaliP93746.
SMRiP93746. Positions 11-39.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG304685.
HOGENOMiHOG000243560.
InParanoidiP93746.
PhylomeDBiP93746.

Family and domain databases

InterProiIPR000316. Metallthion_15.
[Graphical view]
PfamiPF02068. Metallothio_PEC. 1 hit.
[Graphical view]
PRINTSiPR00877. MTPLANTPEC.

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: P93746-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MADTGKGSSV AGCNDSCGCP SPCPGGNSCR CRMREASAGD QGHMVCPCGE
60 70 80
HCGCNPCNCP KTQTQTSAKG CTCGEGCTCA SCAT
Length:84
Mass (Da):8,290
Last modified:November 1, 1997 - v2
Checksum:i09D76F26CDF87676
GO

Sequence cautioni

The sequence AAB63543.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated
The sequence AEC10060.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti68 – 681A → D in CAA83560 (PubMed:8580968).Curated
Sequence conflicti83 – 831A → D in CAA83560 (PubMed:8580968).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U90439 Genomic DNA. Translation: AAB63543.1. Different initiation.
CP002685 Genomic DNA. Translation: AEC10060.1. Different initiation.
Z32602 mRNA. Translation: CAA83560.1.
PIRiG84848.
RefSeqiNP_181731.1. NM_129764.1.
UniGeneiAt.42759.

Genome annotation databases

EnsemblPlantsiAT2G42000.1; AT2G42000.1; AT2G42000.
AT2G42000.2; AT2G42000.2; AT2G42000.
GeneIDi818800.
KEGGiath:AT2G42000.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U90439 Genomic DNA. Translation: AAB63543.1. Different initiation.
CP002685 Genomic DNA. Translation: AEC10060.1. Different initiation.
Z32602 mRNA. Translation: CAA83560.1.
PIRiG84848.
RefSeqiNP_181731.1. NM_129764.1.
UniGeneiAt.42759.

3D structure databases

ProteinModelPortaliP93746.
SMRiP93746. Positions 11-39.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G42000.1; AT2G42000.1; AT2G42000.
AT2G42000.2; AT2G42000.2; AT2G42000.
GeneIDi818800.
KEGGiath:AT2G42000.

Organism-specific databases

TAIRiAT2G42000.

Phylogenomic databases

eggNOGiNOG304685.
HOGENOMiHOG000243560.
InParanoidiP93746.
PhylomeDBiP93746.

Gene expression databases

ExpressionAtlasiP93746. differential.
GenevestigatoriP93746.

Family and domain databases

InterProiIPR000316. Metallthion_15.
[Graphical view]
PfamiPF02068. Metallothio_PEC. 1 hit.
[Graphical view]
PRINTSiPR00877. MTPLANTPEC.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 3-84.
    Strain: cv. Columbia.
    Tissue: Dry seed.

Entry informationi

Entry nameiEC1_ARATH
AccessioniPrimary (citable) accession number: P93746
Secondary accession number(s): F4ILY8, Q42258
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: January 7, 2015
This is version 90 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Metallothioneins
    Classification of metallothioneins and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.