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Protein

(+)-delta-cadinene synthase

Gene

CDN1

Organism
Gossypium hirsutum (Upland cotton) (Gossypium mexicanum)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.

Catalytic activityi

(2E,6E)-farnesyl diphosphate = (+)-delta-cadinene + diphosphate.

Cofactori

Mg2+By similarityNote: Binds 3 Mg2+ ions per subunit.By similarity

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi307 – 3071Magnesium 1By similarity
Metal bindingi307 – 3071Magnesium 2By similarity
Metal bindingi311 – 3111Magnesium 1By similarity
Metal bindingi311 – 3111Magnesium 2By similarity
Metal bindingi451 – 4511Magnesium 3By similarity
Metal bindingi455 – 4551Magnesium 3By similarity

GO - Molecular functioni

  1. (+)-delta-cadinene synthase activity Source: UniProtKB-EC
  2. magnesium ion binding Source: InterPro

GO - Biological processi

  1. terpenoid biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

Magnesium, Metal-binding

Enzyme and pathway databases

UniPathwayiUPA00213.

Names & Taxonomyi

Protein namesi
Recommended name:
(+)-delta-cadinene synthase (EC:4.2.3.13)
Short name:
D-cadinene synthase
Gene namesi
Name:CDN1
OrganismiGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
Taxonomic identifieri3635 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsMalvalesMalvaceaeMalvoideaeGossypium

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 554554(+)-delta-cadinene synthasePRO_0000186443Add
BLAST

Expressioni

Inductioni

By bacterial infection.

Structurei

3D structure databases

ProteinModelPortaliP93665.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi307 – 3115DDXXD motif

Domaini

The Asp-Asp-Xaa-Xaa-Asp/Glu (DDXXD/E) motif is important for the catalytic activity, presumably through binding to Mg2+.

Sequence similaritiesi

Belongs to the terpene synthase family.Curated

Family and domain databases

Gene3Di1.10.600.10. 1 hit.
1.50.30.10. 1 hit.
InterProiIPR001906. Terpene_synth_N.
IPR005630. Terpene_synthase_metal-bd.
IPR008930. Terpenoid_cyclase/PrenylTrfase.
IPR008949. Terpenoid_synth.
[Graphical view]
PfamiPF01397. Terpene_synth. 1 hit.
PF03936. Terpene_synth_C. 1 hit.
[Graphical view]
SUPFAMiSSF48239. SSF48239. 1 hit.
SSF48576. SSF48576. 1 hit.

Sequencei

Sequence statusi: Complete.

P93665-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASQVSQMPS SSPLSSNKDE MRPKADFQPS IWGDFFLNCP DKNIDAETQK
60 70 80 90 100
RHQQLKEEVR KMIVAPMANS TLKLAFIDSV QGLGVSYHFT KEIEDELENI
110 120 130 140 150
YHNNNDAEND LYTTSLRFRL LREHGFHVSC DVFNKFKDEQ GNFKSSVTSD
160 170 180 190 200
VRGLLELYQA SYLRVHGEDI LDEAISFTSN HLSLAVASLD HPLSEEVSHA
210 220 230 240 250
LKQSIRRGLP RVEARHYLSV YQDIESHNKV LLEFAKIDFN MVQLLHRKEL
260 270 280 290 300
SEISRWWKDL DFQRKLPYAR DRVVEGYFWI SGVYFEPQYS LGRKMLTKVI
310 320 330 340 350
AMASIVDDTY DSYATYEELI PYTNAIERWD IKCIDELPEY MKPSYKALLD
360 370 380 390 400
VYEEMEQLVA EHGRQYRVEY AKNAMIRLAQ SYLVEARWTL QNYKPSFEEF
410 420 430 440 450
KANALPTCGY AMLAITSFVG MGDIVTPETF KWAANDPKII QASTIICRFM
460 470 480 490 500
DDVTEHKFKH RREDDCSAIE CYMEEYGVTA QEAYDVFNKH VESAWKDVNQ
510 520 530 540 550
GFLKPTEMPT EVLNRSLNLA RVMDVLYREG DGYTYVGKAA KGGITSLLIE

PIAL
Length:554
Mass (Da):64,020
Last modified:May 1, 1997 - v1
Checksum:i8BCC78AD8CA5B816
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U88318 mRNA. Translation: AAC12784.1.

Cross-referencesi

Web resourcesi

Wikipedia

Delta-cadinene synthase entry

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U88318 mRNA. Translation: AAC12784.1.

3D structure databases

ProteinModelPortaliP93665.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Enzyme and pathway databases

UniPathwayiUPA00213.

Family and domain databases

Gene3Di1.10.600.10. 1 hit.
1.50.30.10. 1 hit.
InterProiIPR001906. Terpene_synth_N.
IPR005630. Terpene_synthase_metal-bd.
IPR008930. Terpenoid_cyclase/PrenylTrfase.
IPR008949. Terpenoid_synth.
[Graphical view]
PfamiPF01397. Terpene_synth. 1 hit.
PF03936. Terpene_synth_C. 1 hit.
[Graphical view]
SUPFAMiSSF48239. SSF48239. 1 hit.
SSF48576. SSF48576. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "cDNA sequence of a (+)-delta-cadinene synthase gene induced in Gossypium hirsutum L. by bacterial infection."
    Davis E.M., Chen Y.-S., Essenberg M., Pierce M.L.
    Plant Gene Register PGR98-040
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Westburn M.
  2. "Purification of (+)-delta-cadinene synthase, a sesquiterpene cyclase from bacteria-inoculated cotton foliar tissue."
    Davis E.M., Tsuji J., Davis G.D., Pierce M.L., Essenberg M.
    Phytochemistry 41:1047-1055(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: PARTIAL PROTEIN SEQUENCE, CHARACTERIZATION.

Entry informationi

Entry nameiDCS1_GOSHI
AccessioniPrimary (citable) accession number: P93665
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: May 1, 1997
Last modified: November 26, 2014
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Direct protein sequencing

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.