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P93541

- DHE3_SOLLC

UniProt

P93541 - DHE3_SOLLC

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Protein
Glutamate dehydrogenase
Gene
GDH1
Organism
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Catalytic activityi

L-glutamate + H2O + NAD(P)+ = 2-oxoglutarate + NH3 + NAD(P)H.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei102 – 1021 By similarity

GO - Molecular functioni

  1. ATP binding Source: EnsemblPlants/Gramene
  2. cobalt ion binding Source: EnsemblPlants/Gramene
  3. copper ion binding Source: EnsemblPlants/Gramene
  4. glutamate dehydrogenase [NAD(P)+] activity Source: UniProtKB-EC
  5. zinc ion binding Source: EnsemblPlants/Gramene

GO - Biological processi

  1. cellular amino acid metabolic process Source: InterPro
  2. regulation of nitrogen compound metabolic process Source: EnsemblPlants/Gramene
  3. response to absence of light Source: EnsemblPlants/Gramene
  4. response to cadmium ion Source: EnsemblPlants/Gramene
  5. response to salt stress Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

NAD

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-15559.

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate dehydrogenase (EC:1.4.1.3)
Short name:
GDH
Alternative name(s):
Legdh1
Gene namesi
Name:GDH1
OrganismiSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
Taxonomic identifieri4081 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanumLycopersicon
ProteomesiUP000004994: Unplaced

Subcellular locationi

Mitochondrion matrix Reviewed prediction

GO - Cellular componenti

  1. mitochondrial matrix Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 412412Glutamate dehydrogenase
PRO_0000182748Add
BLAST

Expressioni

Tissue specificityi

In roots, stems, leaves and flowers but not in fruits.

Structurei

3D structure databases

ProteinModelPortaliP93541.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK00261.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR006095. Glu/Leu/Phe/Val_DH.
IPR006096. Glu/Leu/Phe/Val_DH_C.
IPR006097. Glu/Leu/Phe/Val_DH_dimer_dom.
IPR014362. Glu_DH.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PfamiPF00208. ELFV_dehydrog. 1 hit.
PF02812. ELFV_dehydrog_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000185. Glu_DH. 1 hit.
PRINTSiPR00082. GLFDHDRGNASE.
SMARTiSM00839. ELFV_dehydrog. 1 hit.
[Graphical view]
PROSITEiPS00074. GLFV_DEHYDROGENASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P93541-1 [UniParc]FASTAAdd to Basket

« Hide

MNALAATNRN FKLAARLLGL DSKLELSLLI PFREIKVECT IPKDDGTLAS    50
FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVANIPYGG 100
AKGGIGCSPS DLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTNPQTM 150
AWILDEYSKF HGYSPAVVTG KPVDLGGSLG RDAATGRGAL FATEALLNEH 200
GKSVAGQRFV IQGFGNVGSW AAKLIHEQGG KVVAVSDITG AIKNEKGIDI 250
ESLFKHVKET RGVKGFHDAH PIDANSILVE DCDVLIPAAL GGVINKDNHK 300
LKIKAKYIIE AANHPTDPEA DEILSKKGVT ILPDIYANSG GVTVSYFEWV 350
QNIQGFMWDE KKVNDELKTY MTRGFKDVKD MCKTHNCDLR MGAFTLGVNR 400
VARATVLRGW EA 412
Length:412
Mass (Da):44,813
Last modified:May 1, 1997 - v1
Checksum:i83BC4138047A6BCA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U48695 mRNA. Translation: AAB39508.1.
PIRiJC6317.
RefSeqiNP_001233850.1. NM_001246921.1.
UniGeneiLes.20253.

Genome annotation databases

GeneIDi544015.
KEGGisly:544015.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U48695 mRNA. Translation: AAB39508.1 .
PIRi JC6317.
RefSeqi NP_001233850.1. NM_001246921.1.
UniGenei Les.20253.

3D structure databases

ProteinModelPortali P93541.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 544015.
KEGGi sly:544015.

Phylogenomic databases

KOi K00261.

Enzyme and pathway databases

BioCyci MetaCyc:MONOMER-15559.

Family and domain databases

Gene3Di 3.40.50.720. 1 hit.
InterProi IPR006095. Glu/Leu/Phe/Val_DH.
IPR006096. Glu/Leu/Phe/Val_DH_C.
IPR006097. Glu/Leu/Phe/Val_DH_dimer_dom.
IPR014362. Glu_DH.
IPR016040. NAD(P)-bd_dom.
[Graphical view ]
Pfami PF00208. ELFV_dehydrog. 1 hit.
PF02812. ELFV_dehydrog_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF000185. Glu_DH. 1 hit.
PRINTSi PR00082. GLFDHDRGNASE.
SMARTi SM00839. ELFV_dehydrog. 1 hit.
[Graphical view ]
PROSITEi PS00074. GLFV_DEHYDROGENASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Cloning and characterisation of a glutamate dehydrogenase cDNA from tomato (Lycopersicon esculentum L.)."
    Purnell M.P., Stewart G.R., Botella J.R.
    Gene 186:249-254(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Pera.

Entry informationi

Entry nameiDHE3_SOLLC
AccessioniPrimary (citable) accession number: P93541
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 1, 1997
Last modified: March 19, 2014
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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