P93407 (SODCP_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Superoxide dismutase [Cu-Zn], chloroplastic
EC=1.15.1.1

Gene names

Name:	SODCP
Ordered Locus Names:	Os08g0561700, LOC_Os08g44770
ORF Names:	P0543D10.3, P0604E01.43

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	211 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
Catalytic activity	2 superoxide + 2 H+ = O2 + H2O2.
Cofactor	Binds 1 copper ion per subunit By similarity. Binds 1 zinc ion per subunit By similarity.
Subunit structure	Homotetramer By similarity.
Subcellular location	Plastid › chloroplast.
Sequence similarities	Belongs to the Cu-Zn superoxide dismutase family.
Sequence caution	The sequence BAD09607.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence BAD13222.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Cellular component	Chloroplast Plastid
Domain	Transit peptide
Ligand	Copper Metal-binding Zinc
Molecular function	Antioxidant Oxidoreductase
PTM	Disulfide bond
Technical term	Direct protein sequencing
Gene Ontology (GO)
Biological process	removal of superoxide radicals Inferred from Biological aspect of Ancestor. Source: RefGenome
Molecular function	copper ion binding Inferred from Biological aspect of Ancestor. Source: RefGenome superoxide dismutase activity Inferred from Biological aspect of Ancestor. Source: RefGenome zinc ion binding Inferred from Biological aspect of Ancestor. Source: RefGenome
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Transit peptide	1 – 57	57	Chloroplast Ref.4
	Chain	58 – 211	154	Superoxide dismutase [Cu-Zn], chloroplastic		PRO_0000032847
Sites
	Metal binding	103	1	Copper; catalytic By similarity
	Metal binding	105	1	Copper; catalytic By similarity
	Metal binding	120	1	Copper; catalytic By similarity
	Metal binding	120	1	Zinc; structural By similarity
	Metal binding	128	1	Zinc; structural By similarity
	Metal binding	137	1	Zinc; structural By similarity
	Metal binding	140	1	Zinc; structural By similarity
	Metal binding	177	1	Copper; catalytic By similarity
Amino acid modifications
	Disulfide bond	114 ↔ 203		By similarity

Sequences

	Sequence		Length	Mass (Da)
	P93407 [UniParc]. Last modified May 1, 1997. Version 1. Checksum: E9F073F8D4AFC9F7	FASTA	211	21,301
	10 20 30 40 50 60 MQAILAAAMA AQTLLFSATA PPASLFQSPS SARPFHSLRL AAGPAGAAAA RALVVADATK 70 80 90 100 110 120 KAVAVLKGTS QVEGVVTLTQ DDQGPTTVNV RVTGLTPGLH GFHLHEFGDT TNGCISTGPH 130 140 150 160 170 180 FNPNNLTHGA PEDEVRHAGD LGNIVANAEG VAEATIVDKQ IPLSGPNSVV GRAFVVHELE 190 200 210 DDLGKGGHEL SLSTGNAGGR LACGVVGLTP L

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Molecular cloning and characterization of a cDNA for plastidic copper/zinc-superoxide dismutase in rice (Oryza sativa L.)." Kaminaka H., Morita S., Yokoi H., Masumura T., Tanaka K. Plant Cell Physiol. 38:65-69(1997) [PubMed: 9057336] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Strain: cv. Nipponbare. Tissue: Leaf.
[2]	"Gene cloning of rice plastidic copper/zinc-superoxide dismutase." Kaminaka H., Morita S., Tokumoto M., Tanaka K. Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[4]	"Rice proteome database based on two-dimensional polyacrylamide gel electrophoresis: its status in 2003." Komatsu S., Kojima K., Suzuki K., Ozaki K., Higo K. Nucleic Acids Res. 32:D388-D392(2004) [PubMed: 14681440] [Abstract] Cited for: PROTEIN SEQUENCE OF 58-67. Strain: cv. Nipponbare. Tissue: Leaf, Panicle and Sheath.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	D85239 mRNA. Translation: BAA12745.1. AB026724 Genomic DNA. Translation: BAB21760.1. AP004587 Genomic DNA. Translation: BAD09607.1. Sequence problems. AP005544 Genomic DNA. Translation: BAD13222.1. Sequence problems.
PIR	T03685.
RefSeq	NP_001062514.1. NM_001069049.1.
UniGene	Os.5522.
3D structure databases
ProteinModelPortal	P93407.
SMR	P93407. Positions 58-211.
ModBase	Search...
Protein-protein interaction databases
STRING	P93407.
Proteomic databases
PRIDE	P93407.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	LOC_Os08g44770.1; LOC_Os08g44770.1; LOC_Os08g44770.
GeneID	4346329.
KEGG	osa:4346329.
Organism-specific databases
Gramene	P93407.
Phylogenomic databases
OMA	NNLTHGA.
PhylomeDB	P93407.
ProtClustDB	CLSN2697573.
Family and domain databases
InterPro	IPR024134. SOD_Cu/Zn_/chaperones. IPR018152. SOD_Cu/Zn_BS. IPR001424. SOD_Cu_Zn_dom. [Graphical view]
Gene3D	G3DSA:2.60.40.200. SOD_Cu_Zn. 1 hit.
KO	K04565.
PANTHER	PTHR10003. SOD_Cu_Zn. 1 hit.
Pfam	PF00080. Sod_Cu. 1 hit. [Graphical view]
PRINTS	PR00068. CUZNDISMTASE.
SUPFAM	SSF49329. SOD_Cu_Zn. 1 hit.
PROSITE	PS00087. SOD_CU_ZN_1. 1 hit. PS00332. SOD_CU_ZN_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

SODCP_ORYSJ

Accession

Primary (citable) accession number: P93407
Secondary accession number(s): Q6YYW6, Q76MX3

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 15, 1998
Last sequence update:	May 1, 1997
Last modified:	November 16, 2011
This is version 81 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program