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Protein
Submitted name:

Polygalacturonase-inhibiting protein

Gene

mdpgip1

Organism
Malus domestica (Apple) (Pyrus malus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Polygalacturonase-inhibiting proteinImported
Gene namesi
Name:mdpgip1Imported
Synonyms:pgipImported
OrganismiMalus domestica (Apple) (Pyrus malus)Imported
Taxonomic identifieri3750 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsRosalesRosaceaeMaloideaeMaleaeMalus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424Sequence analysisAdd
BLAST
Chaini25 – 330306Sequence analysisPRO_5005929070Add
BLAST

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini29 – 6638LRRNT_2InterPro annotationAdd
BLAST

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, SignalSequence analysis

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR013210. LRR_N_plant-typ.
[Graphical view]
PfamiPF13516. LRR_6. 1 hit.
PF13855. LRR_8. 1 hit.
PF08263. LRRNT_2. 1 hit.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.

Sequencei

Sequence statusi: Complete.

P93270-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MELKFSIFLS LTLLFSSVLK PALSDLCNPD DKKVLLQIKK AFGDPYVLTS
60 70 80 90 100
WKSDTDCCDW YCVTCDSTTN RINSLTIFAG QVSGQIPALV GDLPYLETLE
110 120 130 140 150
FHKQPNLTGP IQPAIAKLKG LKFLRLSWTN LSGSVPDFLS QLKNLTFLDL
160 170 180 190 200
SFNNLTGAIP SSLSQLPNLN ALHLDRNKLT GHIPKSLGQF IGNVPDLYLS
210 220 230 240 250
HNQLSGNIPT SFAQMDFTSI DLSRNKLEGD ASVIFGLNKT TQIVDLSRNL
260 270 280 290 300
LEFNLSKVEF PTSLTSLDIN HNKIYGSIPV EFTQLNFQFL NVSYNRLCGQ
310 320 330
IPVGGKLQSF DEYSYFHNRC LCGAPLPSCK
Length:330
Mass (Da):36,639
Last modified:May 1, 1997 - v1
Checksum:iA8F4522157064F6F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U77041 mRNA. Translation: AAB19212.1.
DQ185063 Genomic DNA. Translation: ABA26937.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U77041 mRNA. Translation: AAB19212.1.
DQ185063 Genomic DNA. Translation: ABA26937.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR013210. LRR_N_plant-typ.
[Graphical view]
PfamiPF13516. LRR_6. 1 hit.
PF13855. LRR_8. 1 hit.
PF08263. LRRNT_2. 1 hit.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Isolation by PCR-based methods of a plant antifungal polygalacturonase-inhibiting protein gene."
    Arendse M.S., Dubery I.A., Berger D.K.
    Electron. J. Biotechnol. 2:152-159(1999)
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Gene encoding polygalacturonase inhibitor in apple fruit is developmentally regulated and activated by wounding and fungal infection."
    Yao C., Conway W.S., Ren R., Smith D., Ross G.S., Sams C.E.
    Plant Mol. Biol. 39:1231-1241(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Berger D.K.
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiP93270_MALDO
AccessioniPrimary (citable) accession number: P93270
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 1997
Last sequence update: May 1, 1997
Last modified: May 11, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.