P93022 (ARFG_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Auxin response factor 7

Alternative name(s):
Auxin-responsive protein IAA21/IAA23/IAA25
Protein BIPOSTO
Protein NON-PHOTOTROPIC HYPOCOTYL 4
Protein TRANSPORT INHIBITOR RESPONSE 5

Gene names

Name:	ARF7
Synonyms:	BIP, IAA21, IAA23, IAA25, NPH4, TIR5
Ordered Locus Names:	At5g20730
ORF Names:	T1M15.130

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	1164 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Required for differential growth responses of aerial tissues. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF19. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. Ref.11 Ref.13 Ref.14 Ref.15
Subunit structure	Homo- and heterodimers. Interacts with the auxin-responsive proteins IAA1, IAA12 (BODENLOS), IAA19 and ARF5. Ref.10 Ref.12 Ref.15
Subcellular location	Nucleus.
Tissue specificity	Expressed in the whole plant. Ref.10
Domain	Interactions between auxin response factors (ARFs) and Aux/IAA proteins occur through their C-terminal dimerization domains III and IV.
Sequence similarities	Belongs to the ARF family. Contains 1 Aux/IAA-ARF domain. Contains 1 TF-B3 DNA-binding domain.
Sequence caution	The sequence AAB92474.1 differs from that shown. Reason: Frameshift at several positions.

Ontologies

Keywords
Biological process	Auxin signaling pathway Transcription Transcription regulation
Cellular component	Nucleus
Coding sequence diversity	Alternative splicing
Ligand	DNA-binding
Molecular function	Activator Developmental protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	auxin mediated signaling pathway Inferred from electronic annotation. Source: UniProtKB-KW blue light signaling pathway Inferred from mutant phenotype. Source: TAIR gravitropism Traceable author statement. Source: TAIR lateral root primordium development Inferred from genetic interaction Ref.15. Source: TAIR leaf development Inferred from genetic interaction. Source: TAIR phototropism Inferred from mutant phenotype. Source: TAIR positive regulation of transcription, DNA-dependent Inferred from mutant phenotype. Source: TAIR response to ethylene stimulus Inferred from genetic interaction Ref.14. Source: TAIR transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	nucleus Inferred from direct assay Ref.15. Source: TAIR
Molecular function	DNA binding Inferred from direct assay Ref.15. Source: TAIR protein dimerization activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
F3A4.140	Q9SN12	3	EBI-632284,EBI-2324225
IAA1	P49677	3	EBI-632284,EBI-630505
IAA19	O24409	3	EBI-632284,EBI-632257

Alternative products

This entry describes 3 isoforms produced by alternative splicing. [Align] [Select]

Isoform 1 (identifier: P93022-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

Isoform 2 (identifier: P93022-2)

The sequence of this isoform differs from the canonical sequence as follows:
     270-270: R → RW

Note: May be due to a competing donor splice site. No experimental confirmation available.

Isoform 3 (identifier: P93022-3)

The sequence of this isoform differs from the canonical sequence as follows:
     1144-1158: Missing.

Note: Incomplete sequence. May be due to exon skipping. No experimental confirmation available.

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 1164	1164	Auxin response factor 7		PRO_0000111511
Regions
	Domain	1038 – 1120	83	Aux/IAA-ARF
	DNA binding	127 – 229	103	TF-B3
	Compositional bias	479 – 820	342	Gln-rich
Natural variations
	Alternative sequence	270	1	R → RW in isoform 2.		VSP_010090
	Alternative sequence	1144 – 1158	15	Missing in isoform 3.		VSP_010091
Experimental info
	Sequence conflict	108	1	D → N in AAD04807. Ref.3
	Sequence conflict	205	1	L → F in AAD04807. Ref.3
	Sequence conflict	327	1	K → E in AAD04807. Ref.3
	Sequence conflict	470	1	H → D in AAD04807. Ref.3
	Sequence conflict	626	1	S → A in AAD02218. Ref.1
	Sequence conflict	637	1	Q → H in AAD02218. Ref.1
	Sequence conflict	800	1	N → I in AAD04807. Ref.3
	Sequence conflict	839 – 853	15	Missing in AAB92475. Ref.9
	Sequence conflict	920	1	T → N in AAB92475. Ref.9
	Sequence conflict	1038 – 1052	15	Missing in AAB92475. Ref.9

Sequences

	Sequence		Length	Mass (Da)
	Isoform 1 [UniParc]. Last modified April 26, 2004. Version 2. Checksum: 6A2858510130F5B1	FASTA	1,164	128,886
	10 20 30 40 50 60 MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK 70 80 90 100 110 120 QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ PVNKYDRDAL LASDMGLKLN 130 140 150 160 170 180 RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR 190 200 210 220 230 240 HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI 250 260 270 280 290 300 SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI 310 320 330 340 350 360 FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT 370 380 390 400 410 420 PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN SLEMKDPSST IFPGLSLVQW 430 440 450 460 470 480 MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF 490 500 510 520 530 540 NKQNQQAPMS QLPQPPTTLS QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS 550 560 570 580 590 600 QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ 610 620 630 640 650 660 QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ 670 680 690 700 710 720 QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP QETQFSRQVE QQQPPGLNGQ 730 740 750 760 770 780 NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ 790 800 810 820 830 840 QLQQLPTLSQ GHQFPSSCTN NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA 850 860 870 880 890 900 PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG 910 920 930 940 950 960 QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF 970 980 990 1000 1010 1020 VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR TQSFGVPNVP AISNDLAVND 1030 1040 1050 1060 1070 1080 AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP 1090 1100 1110 1120 1130 1140 QTSDWKLVYV DHENDILLVG DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA 1150 1160 CSGGDSGNAW RGHYDDNSAT SFNR
	Isoform 2 [UniParc]. Checksum: 3E203B46178E2002	FASTA	1,165	129,072
	10 20 30 40 50 60 MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK 70 80 90 100 110 120 QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ PVNKYDRDAL LASDMGLKLN 130 140 150 160 170 180 RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR 190 200 210 220 230 240 HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI 250 260 270 280 290 300 SSDSMHIGVL AAAAHANANN SPFTIFYNPR WAAPAEFVVP LAKYTKAMYA QVSLGMRFRM 310 320 330 340 350 360 IFETEECGVR RYMGTVTGIS DLDPVRWKNS QWRNLQIGWD ESAAGDRPSR VSVWDIEPVL 370 380 390 400 410 420 TPFYICPPPF FRPRFSGQPG MPDDETDMES ALKRAMPWLD NSLEMKDPSS TIFPGLSLVQ 430 440 450 460 470 480 WMNMQQQNGQ LPSAAAQPGF FPSMLSPTAA LHNNLGGTDD PSKLLSFQTP HGGISSSNLQ 490 500 510 520 530 540 FNKQNQQAPM SQLPQPPTTL SQQQQLQQLL HSSLNHQQQQ SQSQQQQQQQ QLLQQQQQLQ 550 560 570 580 590 600 SQQHSNNNQS QSQQQQQLLQ QQQQQQLQQQ HQQPLQQQTQ QQQLRTQPLQ SHSHPQPQQL 610 620 630 640 650 660 QQHKLQQLQV PQNQLYNGQQ AAQQHQSQQA STHHLQPQLV SGSMASSVIT PPSSSLNQSF 670 680 690 700 710 720 QQQQQQSKQL QQAHHHLGAS TSQSSVIETS KSSSNLMSAP PQETQFSRQV EQQQPPGLNG 730 740 750 760 770 780 QNQQTLLQQK AHQAQAQQIF QQSLLEQPHI QFQLLQRLQQ QQQQQFLSPQ SQLPHHQLQS 790 800 810 820 830 840 QQLQQLPTLS QGHQFPSSCT NNGLSTLQPP QMLVSRPQEK QNPPVGGGVK AYSGITDGGD 850 860 870 880 890 900 APSSSTSPST NNCQISSSGF LNRSQSGPAI LIPDAAIDMS GNLVQDLYSK SDMRLKQELV 910 920 930 940 950 960 GQQKSKASLT DHQLEASASG TSYGLDGGEN NRQQNFLAPT FGLDGDSRNS LLGGANVDNG 970 980 990 1000 1010 1020 FVPDTLLSRG YDSQKDLQNM LSNYGGVTND IGTEMSTSAV RTQSFGVPNV PAISNDLAVN 1030 1040 1050 1060 1070 1080 DAGVLGGGLW PAQTQRMRTY TKVQKRGSVG RSIDVNRYRG YDELRHDLAR MFGIEGQLED 1090 1100 1110 1120 1130 1140 PQTSDWKLVY VDHENDILLV GDDPWEEFVN CVQSIKILSS AEVQQMSLDG NFAGVPVTNQ 1150 1160 ACSGGDSGNA WRGHYDDNSA TSFNR
	Isoform 3 [UniParc]. Checksum: A402395A65B32EE5	FASTA	1,149	127,254
	10 20 30 40 50 60 MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK 70 80 90 100 110 120 QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ PVNKYDRDAL LASDMGLKLN 130 140 150 160 170 180 RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR 190 200 210 220 230 240 HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI 250 260 270 280 290 300 SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI 310 320 330 340 350 360 FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT 370 380 390 400 410 420 PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN SLEMKDPSST IFPGLSLVQW 430 440 450 460 470 480 MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF 490 500 510 520 530 540 NKQNQQAPMS QLPQPPTTLS QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS 550 560 570 580 590 600 QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ 610 620 630 640 650 660 QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ 670 680 690 700 710 720 QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP QETQFSRQVE QQQPPGLNGQ 730 740 750 760 770 780 NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ 790 800 810 820 830 840 QLQQLPTLSQ GHQFPSSCTN NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA 850 860 870 880 890 900 PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG 910 920 930 940 950 960 QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF 970 980 990 1000 1010 1020 VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR TQSFGVPNVP AISNDLAVND 1030 1040 1050 1060 1070 1080 AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP 1090 1100 1110 1120 1130 1140 QTSDWKLVYV DHENDILLVG DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGATSFNR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Activation and repression of transcription by auxin-response factors." Ulmasov T., Hagen G., Guilfoyle T.J. Proc. Natl. Acad. Sci. U.S.A. 96:5844-5849(1999) [PubMed: 10318972] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TRANSCRIPTIONAL ACTIVATOR. Strain: cv. Columbia.
[2]	"Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19." Okushima Y., Overvoorde P.J., Arima K., Alonso J.M., Chan A., Chang C., Ecker J.R., Hughes B., Lui A., Nguyen D., Onodera C., Quach H., Smith A., Yu G., Theologis A. Plant Cell 17:444-463(2005) [PubMed: 15659631] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1). Strain: cv. Columbia.
[3]	"A novel transcription factor, closely related to the Arabidopsis MP protein, interacts genetically with C-terminal domains of the MP product." Hardtke C.S., Berleth T. Submitted (SEP-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). Strain: cv. Columbia.
[4]	"The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue." Harper R.M., Stowe-Evans E.L., Luesse D.R., Muto H., Tatematsu K., Watahiki M.K., Yamamoto K.T., Liscum E. Plant Cell 12:757-770(2000) [PubMed: 10810148] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: cv. Columbia.
[5]	"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana." Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F. Nature 408:823-826(2000) [PubMed: 11130714] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[6]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[7]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 120-1164 (ISOFORM 1). Strain: cv. Columbia.
[8]	"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs." Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K. , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 551-966. Strain: cv. Columbia.
[9]	"Protein-protein interactions among the Aux/IAA proteins." Kim J., Harter K., Theologis A. Proc. Natl. Acad. Sci. U.S.A. 94:11786-11791(1997) [PubMed: 9342315] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 560-1164 (ISOFORMS 1 AND 3). Strain: cv. Columbia.
[10]	"Dimerization and DNA binding of auxin response factors." Ulmasov T., Hagen G., Guilfoyle T.J. Plant J. 19:309-319(1999) [PubMed: 10476078] [Abstract] Cited for: DIMERIZATION, TISSUE SPECIFICITY.
[11]	"Auxin-responsive gene expression: genes, promoters and regulatory factors." Hagen G., Guilfoyle T.J. Plant Mol. Biol. 49:373-385(2002) [PubMed: 12036261] [Abstract] Cited for: GENE FAMILY, NOMENCLATURE, FUNCTION.
[12]	"MASSUGU2 encodes Aux/IAA19, an auxin-regulated protein that functions together with the transcriptional activator NPH4/ARF7 to regulate differential growth responses of hypocotyl and formation of lateral roots in Arabidopsis thaliana." Tatematsu K., Kumagai S., Muto H., Sato A., Watahiki M.K., Harper R.M., Liscum E., Yamamoto K.T. Plant Cell 16:379-393(2004) [PubMed: 14729917] [Abstract] Cited for: INTERACTION WITH IAA19.
[13]	"Overlapping and non-redundant functions of the Arabidopsis auxin response factors MONOPTEROS and NONPHOTOTROPIC HYPOCOTYL 4." Hardtke C.S., Ckurshumova W., Vidaurre D.P., Singh S.A., Stamatiou G., Tiwari S.B., Hagen G., Guilfoyle T.J., Berleth T. Development 131:1089-1100(2004) [PubMed: 14973283] [Abstract] Cited for: FUNCTION.
[14]	"A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis." Li J., Dai X., Zhao Y. Plant Physiol. 140:899-908(2006) [PubMed: 16461383] [Abstract] Cited for: FUNCTION.
[15]	"ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis." Okushima Y., Fukaki H., Onoda M., Theologis A., Tasaka M. Plant Cell 19:118-130(2007) [PubMed: 17259263] [Abstract] Cited for: FUNCTION, SUBUNIT, INTERACTION WITH ARF5.
[16]	"The plant B3 superfamily." Swaminathan K., Peterson K., Jack T. Trends Plant Sci. 13:647-655(2008) [PubMed: 18986826] [Abstract] Cited for: GENE FAMILY.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF042195 mRNA. Translation: AAD02218.1. AY008392 Genomic DNA. Translation: AAG35177.1. AY669789 mRNA. Translation: AAT67073.1. AF022368 mRNA. Translation: AAD04807.1. AF186466 Genomic DNA. Translation: AAF71831.1. AF296832 Genomic DNA. No translation available. CP002688 Genomic DNA. Translation: AED92884.1. CP002688 Genomic DNA. Translation: AED92885.1. AY080595 mRNA. Translation: AAL85006.1. U49077 mRNA. Translation: AAB84358.1. U79555 mRNA. Translation: AAB92474.1. Frameshift. U79556 mRNA. Translation: AAB92475.1. AK226185 mRNA. Translation: BAE98350.1.
IPI	IPI00521946. IPI00535606. IPI00540271.
RefSeq	NP_851046.1. NM_180715.1. NP_851047.1. NM_180716.2.
UniGene	At.49045. At.59645.
3D structure databases
ProteinModelPortal	P93022.
SMR	P93022. Positions 121-231.
ModBase	Search...
Protein-protein interaction databases
IntAct	P93022. 26 interactions.
STRING	P93022.
Proteomic databases
PRIDE	P93022.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT5G20730.2; AT5G20730.2; AT5G20730.
GeneID	832196.
GenomeReviews	Gene locus AT5G20730 in contig BA000015_GR.
KEGG	ath:AT5G20730.
Organism-specific databases
GeneFarm	3371. 345.
TAIR	At5g20730.
Phylogenomic databases
eggNOG	euNOG22486.
GeneTree	EPGT00070000028440.
InParanoid	P93022.
OMA	RANRQQP.
PhylomeDB	P93022.
ProtClustDB	CLSN2680132.
Gene expression databases
ArrayExpress	P93022.
Genevestigator	P93022.
GermOnline	AT5G20730. Arabidopsis thaliana.
Family and domain databases
InterPro	IPR003311. AUX_IAA. IPR011525. AuxIAA_ARF_dimer. IPR010525. Auxin_resp. IPR003340. B3_DNA-bd. IPR015300. DNA-bd_pseudobarrel. [Graphical view]
Gene3D	G3DSA:2.40.330.10. G3DSA:2.40.330.10. 1 hit.
KO	K14486.
Pfam	PF02309. AUX_IAA. 1 hit. PF06507. Auxin_resp. 1 hit. PF02362. B3. 1 hit. [Graphical view]
SMART	SM01019. B3. 1 hit. [Graphical view]
SUPFAM	SSF101936. Restrict_endonuc_II_EcoRII_N. 1 hit.
PROSITE	PS50863. B3. 1 hit. PS50962. IAA_ARF. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

ARFG_ARATH

Accession

Primary (citable) accession number: P93022
Secondary accession number(s): O24411 , P93023, Q0WWZ8, Q5IRX8, Q8RXZ7, Q9LCZ5, Q9SBK4, Q9SYQ6

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 26, 2004
Last sequence update:	April 26, 2004
Last modified:	January 25, 2012
This is version 98 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program