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Protein

Ethylene-responsive transcription factor ERF112

Gene

ERF112

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi69 – 12658AP2/ERFPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Ethylene signaling pathway, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor ERF112
Gene namesi
Name:ERF112
Ordered Locus Names:At2g33710
ORF Names:T1B8.3
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G33710.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 218218Ethylene-responsive transcription factor ERF112PRO_0000290423Add
BLAST

Proteomic databases

PaxDbiP93007.
PRIDEiP93007.

Expressioni

Gene expression databases

ExpressionAtlasiP93007. baseline and differential.
GenevisibleiP93007. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G33710.2.

Structurei

3D structure databases

ProteinModelPortaliP93007.
SMRiP93007. Positions 68-126.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 AP2/ERF DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410IYVD. Eukaryota.
ENOG410YY7D. LUCA.
HOGENOMiHOG000057294.
InParanoidiP93007.
PhylomeDBiP93007.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: P93007-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI
60 70 80 90 100
DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
110 120 130 140 150
TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT
160 170 180 190 200
PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
210
NLEDGENVKN ISIHKRRK
Length:218
Mass (Da):24,297
Last modified:May 1, 1997 - v1
Checksum:i8427971EAD6CF621
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U78721 Genomic DNA. Translation: AAC69127.1.
CP002685 Genomic DNA. Translation: AEC08872.1.
AY136456 mRNA. Translation: AAM97121.1.
BT000236 mRNA. Translation: AAN15555.1.
PIRiF84748.
RefSeqiNP_180927.1. NM_128929.2. [P93007-1]
UniGeneiAt.37896.

Genome annotation databases

EnsemblPlantsiAT2G33710.1; AT2G33710.1; AT2G33710. [P93007-1]
GeneIDi817936.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U78721 Genomic DNA. Translation: AAC69127.1.
CP002685 Genomic DNA. Translation: AEC08872.1.
AY136456 mRNA. Translation: AAM97121.1.
BT000236 mRNA. Translation: AAN15555.1.
PIRiF84748.
RefSeqiNP_180927.1. NM_128929.2. [P93007-1]
UniGeneiAt.37896.

3D structure databases

ProteinModelPortaliP93007.
SMRiP93007. Positions 68-126.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G33710.2.

Proteomic databases

PaxDbiP93007.
PRIDEiP93007.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G33710.1; AT2G33710.1; AT2G33710. [P93007-1]
GeneIDi817936.

Organism-specific databases

TAIRiAT2G33710.

Phylogenomic databases

eggNOGiENOG410IYVD. Eukaryota.
ENOG410YY7D. LUCA.
HOGENOMiHOG000057294.
InParanoidiP93007.
PhylomeDBiP93007.

Miscellaneous databases

PROiP93007.

Gene expression databases

ExpressionAtlasiP93007. baseline and differential.
GenevisibleiP93007. AT.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Genome-wide analysis of the ERF gene family in Arabidopsis and rice."
    Nakano T., Suzuki K., Fujimura T., Shinshi H.
    Plant Physiol. 140:411-432(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiEF112_ARATH
AccessioniPrimary (citable) accession number: P93007
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: May 1, 1997
Last modified: November 11, 2015
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.