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Protein

Germin-like protein subfamily 2 member 3

Gene

GLP8

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi109 – 1091ManganeseBy similarity
Metal bindingi111 – 1111ManganeseBy similarity
Metal bindingi116 – 1161ManganeseBy similarity
Metal bindingi155 – 1551ManganeseBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Germin-like protein subfamily 2 member 3
Gene namesi
Name:GLP8
Ordered Locus Names:At3g05930
ORF Names:F10A16.23, F2O10.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G05930.

Subcellular locationi

GO - Cellular componenti

  • apoplast Source: TAIR
  • cell wall Source: GO_Central
  • plasmodesma Source: GO_Central
Complete GO annotation...

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 219197Germin-like protein subfamily 2 member 3PRO_0000010823Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi31 ↔ 46By similarity
Glycosylationi70 – 701N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiP93000.
PRIDEiP93000.

Expressioni

Gene expression databases

ExpressionAtlasiP93000. baseline and differential.
GenevisibleiP93000. AT.

Interactioni

Subunit structurei

Oligomer (believed to be a pentamer but probably hexamer).By similarity

Protein-protein interaction databases

STRINGi3702.AT3G05930.1.

Structurei

3D structure databases

ProteinModelPortaliP93000.
SMRiP93000. Positions 23-215.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the germin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IJHX. Eukaryota.
ENOG4111RMA. LUCA.
HOGENOMiHOG000235000.
InParanoidiP93000.
OMAiFMLVAAH.
OrthoDBiEOG09360LVG.
PhylomeDBiP93000.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR006045. Cupin_1.
IPR001929. Germin.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 1 hit.
[Graphical view]
PRINTSiPR00325. GERMIN.
SMARTiSM00835. Cupin_1. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P93000-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATSMIPIFV TFMLVAAHMA LADTNMLQDF CVADLSNGLK VNGYPCKDPA
60 70 80 90 100
KVTPEDFYFI GLATAAATAN SSMGSAVTGA NVEKVPGLNT LGVSISRIDY
110 120 130 140 150
APGGLNPPHL HPRASEAIFV LEGRLFVGFL TTTGKLISKH VNKGDVFVFP
160 170 180 190 200
KALLHFQQNP NKAPASVLAA FDSQLPGTQV VGPSLFGSNP PIPDDLLAKA
210
FGAAAPEIQK IKGKFPPKK
Length:219
Mass (Da):23,033
Last modified:May 1, 1997 - v1
Checksum:iD344858985178CFD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U75207 mRNA. Translation: AAB51585.1.
AC012393 Genomic DNA. Translation: AAF26095.1.
AC013454 Genomic DNA. Translation: AAF23223.1.
CP002686 Genomic DNA. Translation: AEE74317.1.
RefSeqiNP_187244.1. NM_111467.3.
UniGeneiAt.23312.
At.49606.

Genome annotation databases

EnsemblPlantsiAT3G05930.1; AT3G05930.1; AT3G05930.
GeneIDi819762.
GrameneiAT3G05930.1; AT3G05930.1; AT3G05930.
KEGGiath:AT3G05930.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U75207 mRNA. Translation: AAB51585.1.
AC012393 Genomic DNA. Translation: AAF26095.1.
AC013454 Genomic DNA. Translation: AAF23223.1.
CP002686 Genomic DNA. Translation: AEE74317.1.
RefSeqiNP_187244.1. NM_111467.3.
UniGeneiAt.23312.
At.49606.

3D structure databases

ProteinModelPortaliP93000.
SMRiP93000. Positions 23-215.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G05930.1.

Proteomic databases

PaxDbiP93000.
PRIDEiP93000.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G05930.1; AT3G05930.1; AT3G05930.
GeneIDi819762.
GrameneiAT3G05930.1; AT3G05930.1; AT3G05930.
KEGGiath:AT3G05930.

Organism-specific databases

TAIRiAT3G05930.

Phylogenomic databases

eggNOGiENOG410IJHX. Eukaryota.
ENOG4111RMA. LUCA.
HOGENOMiHOG000235000.
InParanoidiP93000.
OMAiFMLVAAH.
OrthoDBiEOG09360LVG.
PhylomeDBiP93000.

Miscellaneous databases

PROiP93000.

Gene expression databases

ExpressionAtlasiP93000. baseline and differential.
GenevisibleiP93000. AT.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR006045. Cupin_1.
IPR001929. Germin.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 1 hit.
[Graphical view]
PRINTSiPR00325. GERMIN.
SMARTiSM00835. Cupin_1. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiGL23_ARATH
AccessioniPrimary (citable) accession number: P93000
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 29, 2001
Last sequence update: May 1, 1997
Last modified: September 7, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.