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Protein

Germin-like protein subfamily 1 member 13

Gene

GLP6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi111ManganeseBy similarity1
Metal bindingi113ManganeseBy similarity1
Metal bindingi118ManganeseBy similarity1
Metal bindingi160ManganeseBy similarity1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Germin-like protein subfamily 1 member 13
Gene namesi
Name:GLP6
Ordered Locus Names:At5g39100
ORF Names:MXF12.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G39100.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 18Sequence analysisAdd BLAST18
ChainiPRO_000001081319 – 222Germin-like protein subfamily 1 member 13Add BLAST204

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi32 ↔ 49By similarity
Glycosylationi78N-linked (GlcNAc...)Sequence analysis1

Keywords - PTMi

Disulfide bond, Glycoprotein

Interactioni

Subunit structurei

Oligomer (believed to be a pentamer but probably hexamer).By similarity

Structurei

3D structure databases

ProteinModelPortaliP92997.
SMRiP92997.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the germin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000235000.
InParanoidiP92997.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR006045. Cupin_1.
IPR001929. Germin.
IPR019780. Germin_Mn-BS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 1 hit.
[Graphical view]
PRINTSiPR00325. GERMIN.
SMARTiSM00835. Cupin_1. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00725. GERMIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P92997-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVSKSLILI TLSALVISFA EAYDPSPLQD FCVAIDDLKN GVFVNGKFCK
60 70 80 90 100
DPKQAKAEDF FFSGLNQAGS TNNKVRSNVT TVNVDQIPGL NTMGISLVRI
110 120 130 140 150
DYAPYGQNPP HTHPRATEIL VLIEGTLYVG FVSSNQDNNR LFAKVLYPGD
160 170 180 190 200
VFVFPIGMIH FQVNIGKTPA VAFAGLSSQN AGVITIADTV FGSTPPINPD
210 220
ILAQAFQLDV NIVEDLEAKF RN
Length:222
Mass (Da):24,095
Last modified:January 25, 2012 - v2
Checksum:i967705F8096E4115
GO

Sequence cautioni

The sequence AED94394 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti214E → K in AAB51572 (PubMed:9869400).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U75194 mRNA. Translation: AAB51572.1.
AB016892 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED94394.1. Sequence problems.
UniGeneiAt.24199.

Genome annotation databases

KEGGiath:AT5G39100.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U75194 mRNA. Translation: AAB51572.1.
AB016892 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED94394.1. Sequence problems.
UniGeneiAt.24199.

3D structure databases

ProteinModelPortaliP92997.
SMRiP92997.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

KEGGiath:AT5G39100.

Organism-specific databases

TAIRiAT5G39100.

Phylogenomic databases

HOGENOMiHOG000235000.
InParanoidiP92997.

Miscellaneous databases

PROiP92997.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR006045. Cupin_1.
IPR001929. Germin.
IPR019780. Germin_Mn-BS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 1 hit.
[Graphical view]
PRINTSiPR00325. GERMIN.
SMARTiSM00835. Cupin_1. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00725. GERMIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGL113_ARATH
AccessioniPrimary (citable) accession number: P92997
Secondary accession number(s): F4KD10
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 29, 2001
Last sequence update: January 25, 2012
Last modified: November 30, 2016
This is version 113 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.