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Protein

Germin-like protein subfamily 1 member 13

Gene

GLP6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi111 – 1111ManganeseBy similarity
Metal bindingi113 – 1131ManganeseBy similarity
Metal bindingi118 – 1181ManganeseBy similarity
Metal bindingi160 – 1601ManganeseBy similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Germin-like protein subfamily 1 member 13
Gene namesi
Name:GLP6
Ordered Locus Names:At5g39100
ORF Names:MXF12.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G39100.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1818Sequence analysisAdd
BLAST
Chaini19 – 222204Germin-like protein subfamily 1 member 13PRO_0000010813Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi32 ↔ 49By similarity
Glycosylationi78 – 781N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Disulfide bond, Glycoprotein

Interactioni

Subunit structurei

Oligomer (believed to be a pentamer but probably hexamer).By similarity

Structurei

3D structure databases

ProteinModelPortaliP92997.
SMRiP92997. Positions 24-220.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the germin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000235000.
InParanoidiP92997.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR006045. Cupin_1.
IPR001929. Germin.
IPR019780. Germin_Mn-BS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 1 hit.
[Graphical view]
PRINTSiPR00325. GERMIN.
SMARTiSM00835. Cupin_1. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00725. GERMIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P92997-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVSKSLILI TLSALVISFA EAYDPSPLQD FCVAIDDLKN GVFVNGKFCK
60 70 80 90 100
DPKQAKAEDF FFSGLNQAGS TNNKVRSNVT TVNVDQIPGL NTMGISLVRI
110 120 130 140 150
DYAPYGQNPP HTHPRATEIL VLIEGTLYVG FVSSNQDNNR LFAKVLYPGD
160 170 180 190 200
VFVFPIGMIH FQVNIGKTPA VAFAGLSSQN AGVITIADTV FGSTPPINPD
210 220
ILAQAFQLDV NIVEDLEAKF RN
Length:222
Mass (Da):24,095
Last modified:January 25, 2012 - v2
Checksum:i967705F8096E4115
GO

Sequence cautioni

The sequence AED94394.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti214 – 2141E → K in AAB51572 (PubMed:9869400).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U75194 mRNA. Translation: AAB51572.1.
AB016892 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED94394.1. Sequence problems.
RefSeqiNP_568562.1. NM_123272.2.
UniGeneiAt.24199.

Genome annotation databases

GeneIDi833903.
KEGGiath:AT5G39100.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U75194 mRNA. Translation: AAB51572.1.
AB016892 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED94394.1. Sequence problems.
RefSeqiNP_568562.1. NM_123272.2.
UniGeneiAt.24199.

3D structure databases

ProteinModelPortaliP92997.
SMRiP92997. Positions 24-220.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi833903.
KEGGiath:AT5G39100.

Organism-specific databases

TAIRiAT5G39100.

Phylogenomic databases

HOGENOMiHOG000235000.
InParanoidiP92997.

Miscellaneous databases

PROiP92997.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR006045. Cupin_1.
IPR001929. Germin.
IPR019780. Germin_Mn-BS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 1 hit.
[Graphical view]
PRINTSiPR00325. GERMIN.
SMARTiSM00835. Cupin_1. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00725. GERMIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Arabidopsis thaliana contains a large family of germin-like proteins: characterization of cDNA and genomic sequences encoding 12 unique family members."
    Carter C., Graham R.A., Thornburg R.W.
    Plant Mol. Biol. 38:929-943(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Columbia.
  2. "Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence features of the regions of 1,081,958 bp covered by seventeen physically assigned P1 and TAC clones."
    Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N., Tabata S.
    DNA Res. 5:379-391(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.

Entry informationi

Entry nameiGL113_ARATH
AccessioniPrimary (citable) accession number: P92997
Secondary accession number(s): F4KD10
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 29, 2001
Last sequence update: January 25, 2012
Last modified: November 11, 2015
This is version 110 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.