Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Germin-like protein subfamily 1 member 13

Gene

GLP6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi111ManganeseBy similarity1
Metal bindingi113ManganeseBy similarity1
Metal bindingi118ManganeseBy similarity1
Metal bindingi160ManganeseBy similarity1

GO - Molecular functioni

Keywordsi

LigandManganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Germin-like protein subfamily 1 member 13
Gene namesi
Name:GLP6
Ordered Locus Names:At5g39100
ORF Names:MXF12.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G39100

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 18Sequence analysisAdd BLAST18
ChainiPRO_000001081319 – 222Germin-like protein subfamily 1 member 13Add BLAST204

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi32 ↔ 49By similarity
Glycosylationi78N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Disulfide bond, Glycoprotein

Expressioni

Gene expression databases

ExpressionAtlasiP92997 baseline and differential

Interactioni

Subunit structurei

Oligomer (believed to be a pentamer but probably hexamer).By similarity

Structurei

3D structure databases

ProteinModelPortaliP92997
SMRiP92997
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the germin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000235000
InParanoidiP92997

Family and domain databases

Gene3Di2.60.120.10, 1 hit
InterProiView protein in InterPro
IPR006045 Cupin_1
IPR001929 Germin
IPR019780 Germin_Mn-BS
IPR014710 RmlC-like_jellyroll
IPR011051 RmlC_Cupin_sf
PfamiView protein in Pfam
PF00190 Cupin_1, 1 hit
PRINTSiPR00325 GERMIN
SMARTiView protein in SMART
SM00835 Cupin_1, 1 hit
SUPFAMiSSF51182 SSF51182, 1 hit
PROSITEiView protein in PROSITE
PS00725 GERMIN, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P92997-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVSKSLILI TLSALVISFA EAYDPSPLQD FCVAIDDLKN GVFVNGKFCK
60 70 80 90 100
DPKQAKAEDF FFSGLNQAGS TNNKVRSNVT TVNVDQIPGL NTMGISLVRI
110 120 130 140 150
DYAPYGQNPP HTHPRATEIL VLIEGTLYVG FVSSNQDNNR LFAKVLYPGD
160 170 180 190 200
VFVFPIGMIH FQVNIGKTPA VAFAGLSSQN AGVITIADTV FGSTPPINPD
210 220
ILAQAFQLDV NIVEDLEAKF RN
Length:222
Mass (Da):24,095
Last modified:January 25, 2012 - v2
Checksum:i967705F8096E4115
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti214E → K in AAB51572 (PubMed:9869400).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U75194 mRNA Translation: AAB51572.1
AB016892 Genomic DNA No translation available.
CP002688 Genomic DNA Translation: AED94394.2
RefSeqiNP_001318702.1, NM_001344284.1
UniGeneiAt.24199

Genome annotation databases

GeneIDi833903
KEGGiath:AT5G39100

Similar proteinsi

Entry informationi

Entry nameiGL113_ARATH
AccessioniPrimary (citable) accession number: P92997
Secondary accession number(s): F4KD10
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 29, 2001
Last sequence update: January 25, 2012
Last modified: April 25, 2018
This is version 121 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health