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Protein

Ras-related protein RABB1c

Gene

RABB1C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Intracellular vesicle trafficking and protein transport.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi13 – 21GTPBy similarity9
Nucleotide bindingi61 – 65GTPBy similarity5
Nucleotide bindingi119 – 122GTPBy similarity4
Nucleotide bindingi149 – 151GTPBy similarity3

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Keywords - Ligandi

GTP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ras-related protein RABB1c
Short name:
AtRABB1c
Alternative name(s):
Ras-related protein Rab2A
Short name:
AtRab2A
Gene namesi
Name:RABB1C
Synonyms:RAB2, RAB2A
Ordered Locus Names:At4g17170
ORF Names:dl4620c, FCAALL.365
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G17170.

Subcellular locationi

GO - Cellular componenti

  • membrane Source: TAIR
  • plasma membrane Source: TAIR
  • vacuole Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedCombined sources
ChainiPRO_00004073562 – 211Ras-related protein RABB1cAdd BLAST210

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylserineCombined sources1
Lipidationi209S-geranylgeranyl cysteineBy similarity1
Lipidationi210S-geranylgeranyl cysteineBy similarity1

Keywords - PTMi

Acetylation, Lipoprotein, Prenylation

Proteomic databases

PaxDbiP92963.
PRIDEiP92963.

Expressioni

Gene expression databases

GenevisibleiP92963. AT.

Interactioni

Protein-protein interaction databases

BioGridi12721. 2 interactors.
IntActiP92963. 2 interactors.
STRINGi3702.AT4G17170.1.

Structurei

3D structure databases

ProteinModelPortaliP92963.
SMRiP92963.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi35 – 43Effector regionBy similarity9

Sequence similaritiesi

Belongs to the small GTPase superfamily. Rab family.Curated

Phylogenomic databases

eggNOGiKOG0098. Eukaryota.
COG1100. LUCA.
HOGENOMiHOG000233968.
InParanoidiP92963.
KOiK07877.
OMAiEGEMFAR.
OrthoDBiEOG09360MD2.
PhylomeDBiP92963.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR001806. Small_GTPase.
[Graphical view]
PfamiPF00071. Ras. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51419. RAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P92963-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI
60 70 80 90 100
DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
110 120 130 140 150
LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA
160 170 180 190 200
KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
210
GSTSQGGGCC G
Length:211
Mass (Da):23,164
Last modified:May 1, 1997 - v1
Checksum:i784E0D4836A5F008
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y09314 mRNA. Translation: CAA70498.1.
Z97343 Genomic DNA. Translation: CAB45962.1.
AL161545 Genomic DNA. Translation: CAB80988.1.
CP002687 Genomic DNA. Translation: AEE83857.1.
BT002513 mRNA. Translation: AAO00873.1.
BT006251 mRNA. Translation: AAP13359.1.
PIRiE71440.
H85191.
RefSeqiNP_193450.1. NM_117821.4.
UniGeneiAt.22725.

Genome annotation databases

EnsemblPlantsiAT4G17170.1; AT4G17170.1; AT4G17170.
GeneIDi827428.
GrameneiAT4G17170.1; AT4G17170.1; AT4G17170.
KEGGiath:AT4G17170.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y09314 mRNA. Translation: CAA70498.1.
Z97343 Genomic DNA. Translation: CAB45962.1.
AL161545 Genomic DNA. Translation: CAB80988.1.
CP002687 Genomic DNA. Translation: AEE83857.1.
BT002513 mRNA. Translation: AAO00873.1.
BT006251 mRNA. Translation: AAP13359.1.
PIRiE71440.
H85191.
RefSeqiNP_193450.1. NM_117821.4.
UniGeneiAt.22725.

3D structure databases

ProteinModelPortaliP92963.
SMRiP92963.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi12721. 2 interactors.
IntActiP92963. 2 interactors.
STRINGi3702.AT4G17170.1.

Proteomic databases

PaxDbiP92963.
PRIDEiP92963.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G17170.1; AT4G17170.1; AT4G17170.
GeneIDi827428.
GrameneiAT4G17170.1; AT4G17170.1; AT4G17170.
KEGGiath:AT4G17170.

Organism-specific databases

TAIRiAT4G17170.

Phylogenomic databases

eggNOGiKOG0098. Eukaryota.
COG1100. LUCA.
HOGENOMiHOG000233968.
InParanoidiP92963.
KOiK07877.
OMAiEGEMFAR.
OrthoDBiEOG09360MD2.
PhylomeDBiP92963.

Miscellaneous databases

PROiP92963.

Gene expression databases

GenevisibleiP92963. AT.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR001806. Small_GTPase.
[Graphical view]
PfamiPF00071. Ras. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51419. RAB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRAB1C_ARATH
AccessioniPrimary (citable) accession number: P92963
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 3, 2011
Last sequence update: May 1, 1997
Last modified: November 30, 2016
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.