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Protein

Ras-related protein RABB1c

Gene

RABB1C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Intracellular vesicle trafficking and protein transport.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi13 – 21GTPBy similarity9
Nucleotide bindingi61 – 65GTPBy similarity5
Nucleotide bindingi119 – 122GTPBy similarity4
Nucleotide bindingi149 – 151GTPBy similarity3

GO - Molecular functioni

GO - Biological processi

  • ER to Golgi vesicle-mediated transport Source: TAIR
  • protein transport Source: UniProtKB-KW
  • regulation of endocytosis Source: GO_Central

Keywordsi

Biological processProtein transport, Transport
LigandGTP-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiR-ATH-8873719 RAB geranylgeranylation

Names & Taxonomyi

Protein namesi
Recommended name:
Ras-related protein RABB1c
Short name:
AtRABB1c
Alternative name(s):
Ras-related protein Rab2A
Short name:
AtRab2A
Gene namesi
Name:RABB1C
Synonyms:RAB2, RAB2A
Ordered Locus Names:At4g17170
ORF Names:dl4620c, FCAALL.365
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G17170
TAIRilocus:2130624 AT4G17170

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedCombined sources
ChainiPRO_00004073562 – 211Ras-related protein RABB1cAdd BLAST210

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylserineCombined sources1
Lipidationi209S-geranylgeranyl cysteineBy similarity1
Lipidationi210S-geranylgeranyl cysteineBy similarity1

Keywords - PTMi

Acetylation, Lipoprotein, Prenylation

Proteomic databases

PaxDbiP92963
PRIDEiP92963

PTM databases

iPTMnetiP92963

Expressioni

Gene expression databases

ExpressionAtlasiP92963 baseline and differential
GenevisibleiP92963 AT

Interactioni

Protein-protein interaction databases

BioGridi12721, 2 interactors
IntActiP92963, 2 interactors
MINTiP92963
STRINGi3702.AT4G17170.1

Structurei

3D structure databases

ProteinModelPortaliP92963
SMRiP92963
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi35 – 43Effector regionBy similarity9

Sequence similaritiesi

Belongs to the small GTPase superfamily. Rab family.Curated

Phylogenomic databases

eggNOGiKOG0098 Eukaryota
COG1100 LUCA
HOGENOMiHOG000233968
InParanoidiP92963
KOiK07877
OMAiFKDHSQH
OrthoDBiEOG09360MD2
PhylomeDBiP92963

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR005225 Small_GTP-bd_dom
IPR001806 Small_GTPase
PfamiView protein in Pfam
PF00071 Ras, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00231 small_GTP, 1 hit
PROSITEiView protein in PROSITE
PS51419 RAB, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P92963-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI
60 70 80 90 100
DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
110 120 130 140 150
LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA
160 170 180 190 200
KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
210
GSTSQGGGCC G
Length:211
Mass (Da):23,164
Last modified:May 1, 1997 - v1
Checksum:i784E0D4836A5F008
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y09314 mRNA Translation: CAA70498.1
Z97343 Genomic DNA Translation: CAB45962.1
AL161545 Genomic DNA Translation: CAB80988.1
CP002687 Genomic DNA Translation: AEE83857.1
BT002513 mRNA Translation: AAO00873.1
BT006251 mRNA Translation: AAP13359.1
PIRiE71440
H85191
RefSeqiNP_193450.1, NM_117821.4
UniGeneiAt.22725

Genome annotation databases

EnsemblPlantsiAT4G17170.1; AT4G17170.1; AT4G17170
GeneIDi827428
GrameneiAT4G17170.1; AT4G17170.1; AT4G17170
KEGGiath:AT4G17170

Similar proteinsi

Entry informationi

Entry nameiRAB1C_ARATH
AccessioniPrimary (citable) accession number: P92963
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 3, 2011
Last sequence update: May 1, 1997
Last modified: April 25, 2018
This is version 130 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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