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P92527

- CCMC_ARATH

UniProt

P92527 - CCMC_ARATH

Protein

Putative cytochrome c biosynthesis ccmC-like mitochondrial protein

Gene

CCMC

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 95 (01 Oct 2014)
      Sequence version 4 (15 Mar 2004)
      Previous versions | rss
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    Functioni

    May be involved in the export of heme to the mitochondrion for the biogenesis of c-type cytochromes.

    GO - Molecular functioni

    1. heme transporter activity Source: InterPro

    GO - Biological processi

    1. respiratory chain complex IV assembly Source: InterPro

    Keywords - Biological processi

    Cytochrome c-type biogenesis

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative cytochrome c biosynthesis ccmC-like mitochondrial protein
    Alternative name(s):
    ABC transporter I family member 3
    Short name:
    ABC transporter ABCI.3
    Short name:
    AtABCI3
    Gene namesi
    Name:CCMC
    Synonyms:ABCI3, ABCI4, ABCI5, CCB256, CCB3
    Ordered Locus Names:AtMg00900
    Encoded oniMitochondrion
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Mitochondrion

    Organism-specific databases

    TAIRiATMG00900.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. mitochondrial membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Membrane, Mitochondrion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 232232Putative cytochrome c biosynthesis ccmC-like mitochondrial proteinPRO_0000201561Add
    BLAST

    Expressioni

    Gene expression databases

    GenevestigatoriP92527.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.ATMG00900.1-P.

    Structurei

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei21 – 4121HelicalSequence AnalysisAdd
    BLAST
    Transmembranei60 – 8021HelicalSequence AnalysisAdd
    BLAST
    Transmembranei91 – 11121HelicalSequence AnalysisAdd
    BLAST
    Transmembranei129 – 14921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei151 – 17121HelicalSequence AnalysisAdd
    BLAST
    Transmembranei192 – 21221HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the CcmC/CycZ/HelC family.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Family and domain databases

    InterProiIPR002541. Cyt_c_assembly.
    IPR003557. Cyt_c_biogenesis_CcmC.
    [Graphical view]
    PfamiPF01578. Cytochrom_C_asm. 1 hit.
    [Graphical view]
    PRINTSiPR01386. CCMCBIOGNSIS.
    TIGRFAMsiTIGR01191. ccmC. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P92527-1 [UniParc]FASTAAdd to Basket

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    MSVSLLQPSF LMSKTRSYAQ ILIGSWLFLT AMAIYLSLGV APLDFQQGGN    50
    SRILYVHVPV AWMSIIVYIA TAINTFLFLL TKHPLYLCSS GTGIEMGAFF 100
    TLFTLVTGGF WGRPMWGTFW VWDARLTSVF ILFFIYLGAL CFQKLPVELA 150
    SILICVGLID IPIIKFSVNW WNTLHQPGSI SRFGTSIHVS MLIPILSNFA 200
    NFLFLTCILF VLETRLLILS FLESSITEEI EA 232
    Length:232
    Mass (Da):26,087
    Last modified:March 15, 2004 - v4
    Checksum:i14B7ECE8A50AFA5D
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti184 – 1841G → S in AAM15415. (PubMed:10617197)Curated

    RNA editingi

    The stop codon at position 233 is created by RNA editing.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Y08501 Genomic DNA. Translation: CAA69832.3. Sequence problems.
    AC007143 Genomic DNA. Translation: AAM15415.1. Sequence problems.
    AC007730 Genomic DNA. Translation: AAM15509.1. Sequence problems.
    BT014752 mRNA. Translation: AAT41735.1. Sequence problems.
    BT014995 mRNA. Translation: AAT70446.1. Sequence problems.
    EF488896 mRNA. Translation: ABS50608.1. Sequence problems.
    EF488897 mRNA. Translation: ABS50609.1. Sequence problems.
    RefSeqiNP_085546.2. NC_001284.2.
    NP_973435.1. NM_201706.1.
    UniGeneiAt.66420.

    Genome annotation databases

    GeneIDi3890473.
    815357.
    KEGGiath:ArthMp079.
    ath:AT2G07771.

    Keywords - Coding sequence diversityi

    RNA editing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Y08501 Genomic DNA. Translation: CAA69832.3 . Sequence problems.
    AC007143 Genomic DNA. Translation: AAM15415.1 . Sequence problems.
    AC007730 Genomic DNA. Translation: AAM15509.1 . Sequence problems.
    BT014752 mRNA. Translation: AAT41735.1 . Sequence problems.
    BT014995 mRNA. Translation: AAT70446.1 . Sequence problems.
    EF488896 mRNA. Translation: ABS50608.1 . Sequence problems.
    EF488897 mRNA. Translation: ABS50609.1 . Sequence problems.
    RefSeqi NP_085546.2. NC_001284.2.
    NP_973435.1. NM_201706.1.
    UniGenei At.66420.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.ATMG00900.1-P.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 3890473.
    815357.
    KEGGi ath:ArthMp079.
    ath:AT2G07771.

    Organism-specific databases

    TAIRi ATMG00900.

    Gene expression databases

    Genevestigatori P92527.

    Family and domain databases

    InterProi IPR002541. Cyt_c_assembly.
    IPR003557. Cyt_c_biogenesis_CcmC.
    [Graphical view ]
    Pfami PF01578. Cytochrom_C_asm. 1 hit.
    [Graphical view ]
    PRINTSi PR01386. CCMCBIOGNSIS.
    TIGRFAMsi TIGR01191. ccmC. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides."
      Unseld M., Marienfeld J.R., Brandt P., Brennicke A.
      Nat. Genet. 15:57-61(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT2G07681 AND AT2G07771).
      Strain: cv. Columbia.
    3. "Arabidopsis ORF clones."
      Shinn P., Chen H., Cheuk R.F., Kim C.J., Ecker J.R.
      Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT2G07681 AND AT2G07771).
      Strain: cv. Columbia.
    4. "Genetic architecture of mitochondrial editing in Arabidopsis thaliana."
      Bentolila S., Elliott L.E., Hanson M.R.
      Genetics 178:1693-1708(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 33-232, RNA EDITING.
      Strain: cv. Columbia and cv. Landsberg erecta.
      Tissue: Rosette leaf.
    5. "RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs."
      Giege P., Brennicke A.
      Proc. Natl. Acad. Sci. U.S.A. 96:15324-15329(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: RNA EDITING.
    6. Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiCCMC_ARATH
    AccessioniPrimary (citable) accession number: P92527
    Secondary accession number(s): A7KNF3
    , Q6IDC1, Q8S883, Q8S8B9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 15, 2004
    Last sequence update: March 15, 2004
    Last modified: October 1, 2014
    This is version 95 of the entry and version 4 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of the duplicated genes (At2g07681 and At2g07771) is demonstrated.

    Caution

    Was originally (PubMed:18299247) thought to belong to the ABC transporter family. Lacks the conserved ABC domain, which is one of the features of the ABC transporter family.1 Publication

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3