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Protein

60S ribosomal protein L27

Gene

rpl-27

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L27
Gene namesi
Name:rpl-27
ORF Names:C53H9.1
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC53H9.1; CE19381; WBGene00004441; rpl-27.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001260841 – 13660S ribosomal protein L27Add BLAST136

Proteomic databases

EPDiP91914.
PaxDbiP91914.
PeptideAtlasiP91914.
PRIDEiP91914.

Expressioni

Gene expression databases

BgeeiWBGene00004441.

Interactioni

Protein-protein interaction databases

STRINGi6239.C53H9.1.2.

Structurei

3D structure databases

ProteinModelPortaliP91914.
SMRiP91914.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 36KOWAdd BLAST32

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3418. Eukaryota.
COG2163. LUCA.
GeneTreeiENSGT00390000010721.
HOGENOMiHOG000210138.
InParanoidiP91914.
KOiK02901.
OMAiRYPRKVH.
OrthoDBiEOG091G0YBM.
PhylomeDBiP91914.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
InterProiView protein in InterPro
IPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR001141. Ribosomal_L27e.
IPR018262. Ribosomal_L27e_CS.
IPR008991. Translation_prot_SH3-like.
PANTHERiPTHR10497. PTHR10497. 1 hit.
PfamiView protein in Pfam
PF00467. KOW. 1 hit.
PF01777. Ribosomal_L27e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD009396. Ribosomal_L27e. 1 hit.
SMARTiView protein in SMART
SM00739. KOW. 1 hit.
SUPFAMiSSF50104. SSF50104. 1 hit.
PROSITEiView protein in PROSITE
PS01107. RIBOSOMAL_L27E. 1 hit.

Sequencei

Sequence statusi: Complete.

P91914-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKIMKPGKV VLVLRGKYAG RKAVVVKQQD EGVSDRTYPH AIIAGIDRYP
60 70 80 90 100
LKVTKDMGKK KIEKRNKLKP FLKVVSYTHL LPTRYSVDVA FDKTNINKEA
110 120 130
LKAPSKKRKA LVEVKSKFEE RYKTGKNKWF FTKLRF
Length:136
Mass (Da):15,728
Last modified:May 1, 1997 - v1
Checksum:i8E0F5BAFCA0F3A33
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U89308 mRNA. Translation: AAB48626.1.
FO080940 Genomic DNA. Translation: CCD67946.1.
RefSeqiNP_490905.1. NM_058504.6.
UniGeneiCel.19696.

Genome annotation databases

EnsemblMetazoaiC53H9.1; C53H9.1; WBGene00004441.
GeneIDi171750.
KEGGicel:CELE_C53H9.1.
UCSCiC53H9.1.1. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL27_CAEEL
AccessioniPrimary (citable) accession number: P91914
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: May 1, 1997
Last modified: June 7, 2017
This is version 101 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families