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Protein

60S ribosomal protein L27

Gene

rpl-27

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Component of the large ribosomal subunit.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L27
Gene namesi
Name:rpl-27
ORF Names:C53H9.1
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC53H9.1 ; CE19381 ; WBGene00004441 ; rpl-27

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Endoplasmic reticulum

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001260841 – 13660S ribosomal protein L27Add BLAST136

Proteomic databases

EPDiP91914
PaxDbiP91914
PeptideAtlasiP91914
PRIDEiP91914

Expressioni

Gene expression databases

BgeeiWBGene00004441

Interactioni

Subunit structurei

Component of the large ribosomal subunit.By similarity

Protein-protein interaction databases

STRINGi6239.C53H9.1.2

Structurei

3D structure databases

ProteinModelPortaliP91914
SMRiP91914
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 36KOWAdd BLAST32

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3418 Eukaryota
COG2163 LUCA
GeneTreeiENSGT00390000010721
HOGENOMiHOG000210138
InParanoidiP91914
KOiK02901
OMAiRYPRKVH
OrthoDBiEOG091G0YBM
PhylomeDBiP91914

Family and domain databases

Gene3Di2.30.30.770, 1 hit
InterProiView protein in InterPro
IPR005824 KOW
IPR038655 L27e_sf
IPR001141 Ribosomal_L27e
IPR018262 Ribosomal_L27e_CS
IPR008991 Translation_prot_SH3-like_sf
PANTHERiPTHR10497 PTHR10497, 1 hit
PfamiView protein in Pfam
PF00467 KOW, 1 hit
PF01777 Ribosomal_L27e, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD009396 Ribosomal_L27e, 1 hit
SMARTiView protein in SMART
SM00739 KOW, 1 hit
SUPFAMiSSF50104 SSF50104, 1 hit
PROSITEiView protein in PROSITE
PS01107 RIBOSOMAL_L27E, 1 hit

Sequencei

Sequence statusi: Complete.

P91914-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKIMKPGKV VLVLRGKYAG RKAVVVKQQD EGVSDRTYPH AIIAGIDRYP
60 70 80 90 100
LKVTKDMGKK KIEKRNKLKP FLKVVSYTHL LPTRYSVDVA FDKTNINKEA
110 120 130
LKAPSKKRKA LVEVKSKFEE RYKTGKNKWF FTKLRF
Length:136
Mass (Da):15,728
Last modified:May 1, 1997 - v1
Checksum:i8E0F5BAFCA0F3A33
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U89308 mRNA Translation: AAB48626.1
FO080940 Genomic DNA Translation: CCD67946.1
RefSeqiNP_490905.1, NM_058504.6
UniGeneiCel.19696

Genome annotation databases

EnsemblMetazoaiC53H9.1.1; C53H9.1.1; WBGene00004441
C53H9.1.2; C53H9.1.2; WBGene00004441
GeneIDi171750
KEGGicel:CELE_C53H9.1
UCSCiC53H9.1.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRL27_CAEEL
AccessioniPrimary (citable) accession number: P91914
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: May 1, 1997
Last modified: April 25, 2018
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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