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Protein

60S ribosomal protein L27

Gene

rpl-27

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L27
Gene namesi
Name:rpl-27
ORF Names:C53H9.1
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC53H9.1; CE19381; WBGene00004441; rpl-27.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001260841 – 13660S ribosomal protein L27Add BLAST136

Proteomic databases

EPDiP91914.
PaxDbiP91914.
PeptideAtlasiP91914.
PRIDEiP91914.

Expressioni

Gene expression databases

BgeeiWBGene00004441.

Interactioni

Protein-protein interaction databases

STRINGi6239.C53H9.1.2.

Structurei

3D structure databases

ProteinModelPortaliP91914.
SMRiP91914.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 36KOWAdd BLAST32

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3418. Eukaryota.
COG2163. LUCA.
GeneTreeiENSGT00390000010721.
HOGENOMiHOG000210138.
InParanoidiP91914.
KOiK02901.
OMAiRYPRKVH.
OrthoDBiEOG091G0YBM.
PhylomeDBiP91914.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
InterProiView protein in InterPro
IPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR001141. Ribosomal_L27e.
IPR018262. Ribosomal_L27e_CS.
IPR008991. Translation_prot_SH3-like.
PANTHERiPTHR10497. PTHR10497. 1 hit.
PfamiView protein in Pfam
PF00467. KOW. 1 hit.
PF01777. Ribosomal_L27e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD009396. Ribosomal_L27e. 1 hit.
SMARTiView protein in SMART
SM00739. KOW. 1 hit.
SUPFAMiSSF50104. SSF50104. 1 hit.
PROSITEiView protein in PROSITE
PS01107. RIBOSOMAL_L27E. 1 hit.

Sequencei

Sequence statusi: Complete.

P91914-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKIMKPGKV VLVLRGKYAG RKAVVVKQQD EGVSDRTYPH AIIAGIDRYP
60 70 80 90 100
LKVTKDMGKK KIEKRNKLKP FLKVVSYTHL LPTRYSVDVA FDKTNINKEA
110 120 130
LKAPSKKRKA LVEVKSKFEE RYKTGKNKWF FTKLRF
Length:136
Mass (Da):15,728
Last modified:May 1, 1997 - v1
Checksum:i8E0F5BAFCA0F3A33
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U89308 mRNA. Translation: AAB48626.1.
FO080940 Genomic DNA. Translation: CCD67946.1.
RefSeqiNP_490905.1. NM_058504.6.
UniGeneiCel.19696.

Genome annotation databases

EnsemblMetazoaiC53H9.1; C53H9.1; WBGene00004441.
GeneIDi171750.
KEGGicel:CELE_C53H9.1.
UCSCiC53H9.1.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U89308 mRNA. Translation: AAB48626.1.
FO080940 Genomic DNA. Translation: CCD67946.1.
RefSeqiNP_490905.1. NM_058504.6.
UniGeneiCel.19696.

3D structure databases

ProteinModelPortaliP91914.
SMRiP91914.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.C53H9.1.2.

Proteomic databases

EPDiP91914.
PaxDbiP91914.
PeptideAtlasiP91914.
PRIDEiP91914.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC53H9.1; C53H9.1; WBGene00004441.
GeneIDi171750.
KEGGicel:CELE_C53H9.1.
UCSCiC53H9.1.1. c. elegans.

Organism-specific databases

CTDi171750.
WormBaseiC53H9.1; CE19381; WBGene00004441; rpl-27.

Phylogenomic databases

eggNOGiKOG3418. Eukaryota.
COG2163. LUCA.
GeneTreeiENSGT00390000010721.
HOGENOMiHOG000210138.
InParanoidiP91914.
KOiK02901.
OMAiRYPRKVH.
OrthoDBiEOG091G0YBM.
PhylomeDBiP91914.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:P91914.

Gene expression databases

BgeeiWBGene00004441.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
InterProiView protein in InterPro
IPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR001141. Ribosomal_L27e.
IPR018262. Ribosomal_L27e_CS.
IPR008991. Translation_prot_SH3-like.
PANTHERiPTHR10497. PTHR10497. 1 hit.
PfamiView protein in Pfam
PF00467. KOW. 1 hit.
PF01777. Ribosomal_L27e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD009396. Ribosomal_L27e. 1 hit.
SMARTiView protein in SMART
SM00739. KOW. 1 hit.
SUPFAMiSSF50104. SSF50104. 1 hit.
PROSITEiView protein in PROSITE
PS01107. RIBOSOMAL_L27E. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL27_CAEEL
AccessioniPrimary (citable) accession number: P91914
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: May 1, 1997
Last modified: June 7, 2017
This is version 101 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.