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Protein
Submitted name:

C. Elegans Y-box

Gene

cey-3

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • DNA binding Source: InterPro
  • ribonucleoprotein complex binding Source: WormBase

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-CEL-72163. mRNA Splicing - Major Pathway.
R-CEL-72165. mRNA Splicing - Minor Pathway.

Names & Taxonomyi

Protein namesi
Submitted name:
C. Elegans Y-boxImported
Gene namesi
Name:cey-3Imported
ORF Names:CELE_M01E11.5Imported, M01E11.5Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiM01E11.5; CE12296; WBGene00000474; cey-3.

Subcellular locationi

GO - Cellular componenti

  • intracellular ribonucleoprotein complex Source: WormBase
Complete GO annotation...

PTM / Processingi

Proteomic databases

EPDiP91398.
PaxDbiP91398.

Interactioni

Protein-protein interaction databases

STRINGi6239.M01E11.5.2.

Structurei

3D structure databases

ProteinModelPortaliP91398.
SMRiP91398. Positions 57-135.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini65 – 13470CSPInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili179 – 20224Sequence analysisAdd
BLAST

Sequence similaritiesi

Contains 1 CSD (cold-shock) domain.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG3070. Eukaryota.
COG1278. LUCA.
GeneTreeiENSGT00840000129777.
HOGENOMiHOG000016644.
InParanoidiP91398.
KOiK09276.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P91398-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDTANTAVE VDEQVIEKKL DDLSIGKKRS PSKDDTSKHR LPAAERIRIW
60 70 80 90 100
EEEQKAKIVL TAGLQGKVKW YSVLRRYGFI SRSDGEKDVF VHQTAISKSD
110 120 130 140 150
TEKFYLRTLA DEEEVLFDLV DGKNGPEAAN VTGPAGVNVS GSKYRHQLLS
160 170 180 190 200
RFRKNRKPKI VVGEDFDSKE TEKLVEAPAV AMEKKKQRKQ RKNKNRKQKD
210 220 230 240 250
QKGAGDAADS SATTESLGTS SETASPDSKS CTKIISEEAG LSKIDRCDSA
260
LDDAGLGAQL IDAQI
Length:265
Mass (Da):29,244
Last modified:May 1, 1997 - v1
Checksum:iCE8DE28CDE4F912E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD71344.1.
PIRiT29322.
RefSeqiNP_491631.1. NM_059230.6.
UniGeneiCel.18434.

Genome annotation databases

EnsemblMetazoaiM01E11.5.1; M01E11.5.1; WBGene00000474.
M01E11.5.2; M01E11.5.2; WBGene00000474.
GeneIDi172211.
KEGGicel:CELE_M01E11.5.
UCSCiM01E11.5.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD71344.1.
PIRiT29322.
RefSeqiNP_491631.1. NM_059230.6.
UniGeneiCel.18434.

3D structure databases

ProteinModelPortaliP91398.
SMRiP91398. Positions 57-135.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.M01E11.5.2.

Proteomic databases

EPDiP91398.
PaxDbiP91398.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiM01E11.5.1; M01E11.5.1; WBGene00000474.
M01E11.5.2; M01E11.5.2; WBGene00000474.
GeneIDi172211.
KEGGicel:CELE_M01E11.5.
UCSCiM01E11.5.1. c. elegans.

Organism-specific databases

CTDi172211.
WormBaseiM01E11.5; CE12296; WBGene00000474; cey-3.

Phylogenomic databases

eggNOGiKOG3070. Eukaryota.
COG1278. LUCA.
GeneTreeiENSGT00840000129777.
HOGENOMiHOG000016644.
InParanoidiP91398.
KOiK09276.

Enzyme and pathway databases

ReactomeiR-CEL-72163. mRNA Splicing - Major Pathway.
R-CEL-72165. mRNA Splicing - Minor Pathway.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiP91398_CAEEL
AccessioniPrimary (citable) accession number: P91398
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 1997
Last sequence update: May 1, 1997
Last modified: June 8, 2016
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.