Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Gag polyprotein

Gene

gag

Organism
Feline immunodeficiency virus
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Gag polyproteinSAAS annotation
Gene namesi
Name:gagImported
OrganismiFeline immunodeficiency virusImported
Taxonomic identifieri11673 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeLentivirusFeline lentivirus group

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid proteinUniRule annotation, Virion

Structurei

3D structure databases

ProteinModelPortaliP89686.
SMRiP89686. Positions 408-448.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini410 – 42516CCHC-typeInterPro annotationAdd
BLAST
Domaini428 – 44316CCHC-typeInterPro annotationAdd
BLAST

Keywords - Domaini

Zinc-fingerUniRule annotation

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 2 hits.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P89686-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGNEQGKEVK AAVKRCKEVA VGPGSKSKKY GEGNIRWAIR MANVTTGRDP
60 70 80 90 100
GKLPENIAQV RNLVCDLMEI RDKYGSNKEI EAAIKTLKVL GVVGILFMKA
110 120 130 140 150
SNTDSAVNLW EIMGLNSRPS EKGPGGEEEA MPSAFQAKEQ KGVGLRDPQD
160 170 180 190 200
IAKEYPIQVV NGQAQYVPLN PRMVAIFMEK ARDGLGTEEV LLWFTAFSAD
210 220 230 240 250
LTPTDMATIL MSAPGCAADK EIIDTKLKEL TTEYERTHPS DAPRPLPYFT
260 270 280 290 300
AREIMGLDLT QDQQAQPQFH AGRVQARAWY IEALQYLQKI KSRSPRAVQM
310 320 330 340 350
KQGPKEDYAS FIDRLYAQID QEQNSPEVKI YLKQSLSLAN ANPECKKAMS
360 370 380 390 400
HLKPESTLEE KLRACQEVGS TSYKMNMLAQ ALQQQSQVCQ VQQGRGKPQG
410 420 430 440 450
NNRRPGQSLK CFNCGKPGHL ARNCRAPRKC NKCGKAGHIA TDCWDMQGKQ
460 470 480 490
QGNWQKGRAA APIKQVQQFQ TAVSTTQNQQ QCQLIQPSAP PMESLMDI
Length:498
Mass (Da):55,285
Last modified:May 1, 1997 - v1
Checksum:iE3B971DF4E115ADC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U56928 Genomic DNA. Translation: AAB49922.1.
AY713445 Genomic RNA. Translation: AAU20797.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U56928 Genomic DNA. Translation: AAB49922.1.
AY713445 Genomic RNA. Translation: AAU20797.1.

3D structure databases

ProteinModelPortaliP89686.
SMRiP89686. Positions 408-448.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 2 hits.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Isolation of a highly cytopathic lentivirus from a nondomestic cat."
    Barr M.C., Zou L., Holzschu D.L., Phillips L., Scott F.W., Casey J.W., Avery R.J.
    J. Virol. 69:7371-7374(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: FIV-OmaImported.
  2. "Proviral organization and sequence analysis of feline immunodeficiency virus isolated from a Pallas' cat."
    Barr M.C., Zou L., Long F., Hoose W.A., Avery R.J.
    Virology 228:84-91(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: FIV-OmaImported.
  3. "Feline immunodeficiency virus (FIV) nucleotide sequence."
    Barr M.C., Avery R.J., Sutton C.A.
    Submitted (AUG-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. "Comparative replication kinetics of two cytopathic feline lentiviruses ex vivo."
    Sutton C.A., Gordnier P.M., Avery R.J., Casey J.W.
    Virology 332:519-528(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiP89686_9RETR
AccessioniPrimary (citable) accession number: P89686
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 1997
Last sequence update: May 1, 1997
Last modified: February 17, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.