P89521 (P89521_9VIRU) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names	Submitted name: Polyprotein EMBL BAA22055.1
Organism	Yellowtail ascites virus - Y-6 EMBL BAA22055.1
Taxonomic identifier	360000 [NCBI]
Taxonomic lineage	Viruses › dsRNA viruses › Birnaviridae › Aquabirnavirus › Yellowtail ascites virus

Protein attributes

Sequence length	972 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 4IZJ PDB 4IZK
Gene Ontology (GO)
Molecular_function	structural molecule activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Amino acid modifications
	Modified residue	634	1	Cysteine sulfenic acid (-SOH) PDB 4IZJ
	Modified residue	669	1	Cysteine sulfenic acid (-SOH) PDB 4IZJ PDB 4IZK

Sequences

	Sequence		Length	Mass (Da)
	P89521 [UniParc]. Last modified May 1, 1997. Version 1. Checksum: 4F9149F65966F226	FASTA	972	106,768
	10 20 30 40 50 60 MNTTKATATY LRSIMLPENG PASIPDDITE RHILKQETSS YNLEVSDSGS GLLVCFPGAP 70 80 90 100 110 120 GSRVGAHYKW NQNQTELEFD QWLETSQDLK KAFNYGRLIS RKYDVQSSTL PAGLYALNGT 130 140 150 160 170 180 LNAATFEGSL SEVESFSYNS LMSLTTNPQD KVNNQLVTKG VTVLNLPTGF DKPYVRLEDE 190 200 210 220 230 240 TPQGPQSMNG ARMRCTAAIA PRRYEIDLPS ARLPTVPATG TLTTIYEGNA DIVNSTTVTG 250 260 270 280 290 300 DISFRLEQDP PNDTKYDFQL DFLGLDNNVP VVSITSSTLA TTDNYRGVSV KFTQSIPTET 310 320 330 340 350 360 ITKPITRVKL SYKINQQTAI GNAATLGPLG PSSVSFSSGN GNVPGVLRPI TLVAYEKMTP 370 380 390 400 410 420 QSILTVAGVS NYELIPNPEL LKNMVTKYGK YDPEGLNYAK MILSHREELD IRTVWRTEEY 430 440 450 460 470 480 KERTRAFNEI TDFSSDLPTS KAWGWRDIVR GIRKVAAPVL STLFPMAAPL IGAADQFIGD 490 500 510 520 530 540 LTKTNAAGGR YLTHAAGGRY TDVMDSWASG TDTGRFSRNL KDRLESNNYE EMELPPPTKG 550 560 570 580 590 600 VIIPVVHTVE SAPGEAFGSL LVIIPGAYPE LLDPNQQVLS HFKNDTGCVW GIGEDIPFEG 610 620 630 640 650 660 DDICYTALPL KEIKKNGNIV VEKVFAGPAM GPSCQLGLSL LVNDIDKGVP RMVFTGEIAN 670 680 690 700 710 720 DEETIVPICG VDIKAIAAHE HGLPLVGCQP GVDEVVANTS LASHLIQSGA LPVQKAQGAS 730 740 750 760 770 780 RRIKYLGELM RTTASGMDEE LQKLLHATMA RAKEVKDAEV FKLLKLMSWT RKNGLTDHMY 790 800 810 820 830 840 EWSKEDPEAV KFGKLISTPP KHQEKPKGPD QHTAQEAKAV RISLDAVKAG ADFASPDWIA 850 860 870 880 890 900 ENGYRGPSPG QFKYYVITGR VPDPRDEYED YVRKPITRPT DMDKIRRLAN SVYGLPHQEP 910 920 930 940 950 960 APEEFYQAVV EIFAENGGRG PDQDQMQDLR DLARQMKRRP RPAETRRQNR APPRAAPSGS 970 SRFTPSGDNG EV

References

[1]	"The complete nucleotide sequence of the polyprotein and VP5 gene of a marine birnavirus." Suzuki S., Kimura M., Kusuda R. Fish. Sci. 64:428-433(1998) Cited for: NUCLEOTIDE SEQUENCE. Strain: Y-6 EMBL BAA22055.1.
[2]	"Crystal structures of Yellowtail Ascites Virus VP4 protease: trapping an internal cleavage site trans acyl-enzyme complex in a native Ser/Lys dyad active site." Chung I.Y.W., Paetzel M. Submitted (JAN-2013) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) OF 508-716, CYSTEINE SULFENIC ACID (-SOH) AT CYS-669.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AB006783 Genomic RNA. Translation: BAA22055.1.

RefSeq

NP_690805.1. NC_004168.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
4IZJ	X-ray	2.50	A/B/C/D/E	508-716	[»]
4IZK	X-ray	2.30	A/B	508-716	[»]

ModBase

Search...

Protein family/group databases

MEROPS

S50.001.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

995355.

Family and domain databases

InterPro

IPR002662. Birna_VP2.
IPR002663. Birna_VP3.
IPR025775. Birna_VP4_Prtase_dom.
[Graphical view]

Pfam

PF01766. Birna_VP2. 1 hit.
PF01767. Birna_VP3. 1 hit.
PF01768. Birna_VP4. 1 hit.
[Graphical view]

PROSITE

PS51548. BIRNAVIRUS_VP4_PRO. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

P89521_9VIRU

Accession

Primary (citable) accession number: P89521

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 1997
Last sequence update:	May 1, 1997
Last modified:	May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)