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P89036 (CAPSD_PMVK) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Capsid protein
Alternative name(s):
Coat protein
p26
Gene names
ORF Names:ORF3
OrganismPanicum mosaic virus (strain United States/Kansas 109S) (PMV) [Reference proteome]
Taxonomic identifier652599 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageTombusviridaePanicovirus
Virus hostMuhlenbergia [TaxID: 58090]
Panicum virgatum (Switchgrass) [TaxID: 38727]

Protein attributes

Sequence length242 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

Subunit structure

Homomultimer Potential.

Subcellular location

Virion Potential.

Sequence similarities

Belongs to the icosahedral plant coat protein family.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 242242Capsid protein
PRO_0000399481

Secondary structure

................................ 242
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P89036 [UniParc].

Last modified May 1, 1997. Version 1.
Checksum: 48734468E6E3A7D3

FASTA24226,355
        10         20         30         40         50         60 
MNRNGATPTR GRGKRAIPNP PRRRARGKSV ERGSTPLQYV TTLGPSRPRM GQGQGWQKLS 

        70         80         90        100        110        120 
HEEIILQVNS STAADTIQTI PIIPRLSVPA GDKPIYSGSA PHLRTIGSAF AIHRWRALSF 

       130        140        150        160        170        180 
EWIPSCPTTT PGNLVLRFYP NYSTETPKTL TDLMDSESLV LVPSLSGKTY RPKIETRGNP 

       190        200        210        220        230        240 
PELRNIDATA FSALSDEDKG DYSVGRLVVG SSKQAVVIQL GLLRMRYSAE MRGATSISGV 


SA 

« Hide

References

[1]"Nucleotide sequence and infectivity of a full-length cDNA clone of panicum mosaic virus."
Turina M., Maruoka M., Monis J., Jackson A.O., Scholthof K.B.
Virology 241:141-155(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U55002 Genomic RNA. Translation: AAC97555.1.
RefSeqNP_068346.1. NC_002598.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4FY1X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY2X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY3X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY4X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY5X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY6X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY7X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY8X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY9X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FYAX-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
ProteinModelPortalP89036.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID912244.

Family and domain databases

Gene3D2.60.120.20. 1 hit.
InterProIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamPF00729. Viral_coat. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCAPSD_PMVK
AccessionPrimary (citable) accession number: P89036
Entry history
Integrated into UniProtKB/Swiss-Prot: October 5, 2010
Last sequence update: May 1, 1997
Last modified: July 9, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PDB cross-references

Index of Protein Data Bank (PDB) cross-references