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Protein

Capsid protein

Gene

ORF3

Organism
Panicum mosaic virus (strain United States/Kansas 109S) (PMV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
p26
Gene namesi
ORF Names:ORF3
OrganismiPanicum mosaic virus (strain United States/Kansas 109S) (PMV)
Taxonomic identifieri652599 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTombusviridaePanicovirus
Virus hostiMuhlenbergia [TaxID: 58090]
Panicum virgatum (Switchgrass) [TaxID: 38727]
Proteomesi
  • UP000001665 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003994811 – 242Capsid proteinAdd BLAST242

Interactioni

Subunit structurei

Homomultimer.Curated

Structurei

Secondary structure

1242
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi57 – 70Combined sources14
Beta strandi72 – 74Combined sources3
Beta strandi76 – 81Combined sources6
Beta strandi90 – 93Combined sources4
Helixi101 – 107Combined sources7
Beta strandi110 – 124Combined sources15
Beta strandi134 – 140Combined sources7
Helixi150 – 153Combined sources4
Beta strandi156 – 161Combined sources6
Beta strandi167 – 170Combined sources4
Beta strandi177 – 179Combined sources3
Helixi188 – 192Combined sources5
Helixi196 – 199Combined sources4
Helixi200 – 202Combined sources3
Beta strandi206 – 211Combined sources6
Beta strandi218 – 234Combined sources17

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V99X-ray2.90A1/A4/A5/A6/AA/AB/AC/AF/AG/AH/AK/AL/AM/AP/AQ/AR/AU/AV/AW/AZ/Aa/Ab/Ae/Af/Ag/Aj/Ak/Al/Ao/Ap1-242[»]
ProteinModelPortaliP89036.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P89036-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRNGATPTR GRGKRAIPNP PRRRARGKSV ERGSTPLQYV TTLGPSRPRM
60 70 80 90 100
GQGQGWQKLS HEEIILQVNS STAADTIQTI PIIPRLSVPA GDKPIYSGSA
110 120 130 140 150
PHLRTIGSAF AIHRWRALSF EWIPSCPTTT PGNLVLRFYP NYSTETPKTL
160 170 180 190 200
TDLMDSESLV LVPSLSGKTY RPKIETRGNP PELRNIDATA FSALSDEDKG
210 220 230 240
DYSVGRLVVG SSKQAVVIQL GLLRMRYSAE MRGATSISGV SA
Length:242
Mass (Da):26,355
Last modified:May 1, 1997 - v1
Checksum:i48734468E6E3A7D3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U55002 Genomic RNA. Translation: AAC97555.1.
RefSeqiNP_068346.1. NC_002598.1.

Genome annotation databases

GeneIDi912244.
KEGGivg:912244.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U55002 Genomic RNA. Translation: AAC97555.1.
RefSeqiNP_068346.1. NC_002598.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V99X-ray2.90A1/A4/A5/A6/AA/AB/AC/AF/AG/AH/AK/AL/AM/AP/AQ/AR/AU/AV/AW/AZ/Aa/Ab/Ae/Af/Ag/Aj/Ak/Al/Ao/Ap1-242[»]
ProteinModelPortaliP89036.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi912244.
KEGGivg:912244.

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCAPSD_PMVK
AccessioniPrimary (citable) accession number: P89036
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 5, 2010
Last sequence update: May 1, 1997
Last modified: June 24, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.