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P89036

- CAPSD_PMVK

UniProt

P89036 - CAPSD_PMVK

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Protein

Capsid protein

Gene

ORF3

Organism
Panicum mosaic virus (strain United States/Kansas 109S) (PMV)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

  1. structural molecule activity Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
p26
Gene namesi
ORF Names:ORF3
OrganismiPanicum mosaic virus (strain United States/Kansas 109S) (PMV)
Taxonomic identifieri652599 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaePanicovirus
Virus hostiMuhlenbergia [TaxID: 58090]
Panicum virgatum (Switchgrass) [TaxID: 38727]
ProteomesiUP000001665: Genome

Subcellular locationi

Virion Curated

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 242242Capsid proteinPRO_0000399481Add
BLAST

Interactioni

Subunit structurei

Homomultimer.Curated

Structurei

Secondary structure

1
242
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi57 – 7014
Beta strandi72 – 743
Beta strandi76 – 816
Beta strandi90 – 934
Helixi101 – 1077
Beta strandi110 – 12415
Beta strandi134 – 1407
Helixi150 – 1534
Beta strandi156 – 1616
Beta strandi167 – 1704
Beta strandi177 – 1793
Helixi188 – 1925
Helixi196 – 1994
Helixi200 – 2023
Beta strandi206 – 2116
Beta strandi218 – 23417

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4FY1X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY2X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY3X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY4X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY5X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY6X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY7X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY8X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FY9X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
4FYAX-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
ProteinModelPortaliP89036.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P89036-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNRNGATPTR GRGKRAIPNP PRRRARGKSV ERGSTPLQYV TTLGPSRPRM
60 70 80 90 100
GQGQGWQKLS HEEIILQVNS STAADTIQTI PIIPRLSVPA GDKPIYSGSA
110 120 130 140 150
PHLRTIGSAF AIHRWRALSF EWIPSCPTTT PGNLVLRFYP NYSTETPKTL
160 170 180 190 200
TDLMDSESLV LVPSLSGKTY RPKIETRGNP PELRNIDATA FSALSDEDKG
210 220 230 240
DYSVGRLVVG SSKQAVVIQL GLLRMRYSAE MRGATSISGV SA
Length:242
Mass (Da):26,355
Last modified:May 1, 1997 - v1
Checksum:i48734468E6E3A7D3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U55002 Genomic RNA. Translation: AAC97555.1.
RefSeqiNP_068346.1. NC_002598.1.

Genome annotation databases

GeneIDi912244.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U55002 Genomic RNA. Translation: AAC97555.1 .
RefSeqi NP_068346.1. NC_002598.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4FY1 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
4FY2 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
4FY3 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
4FY4 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
4FY5 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
4FY6 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
4FY7 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
4FY8 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
4FY9 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
4FYA X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
ProteinModelPortali P89036.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 912244.

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF00729. Viral_coat. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Nucleotide sequence and infectivity of a full-length cDNA clone of panicum mosaic virus."
    Turina M., Maruoka M., Monis J., Jackson A.O., Scholthof K.B.
    Virology 241:141-155(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiCAPSD_PMVK
AccessioniPrimary (citable) accession number: P89036
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 5, 2010
Last sequence update: May 1, 1997
Last modified: October 1, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3