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P89036

- CAPSD_PMVK

UniProt

P89036 - CAPSD_PMVK

Protein

Capsid protein

Gene

ORF3

Organism
Panicum mosaic virus (strain United States/Kansas 109S) (PMV)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 44 (01 Oct 2014)
      Sequence version 1 (01 May 1997)
      Previous versions | rss
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    Functioni

    Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

    GO - Molecular functioni

    1. structural molecule activity Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Capsid protein
    Alternative name(s):
    Coat protein
    p26
    Gene namesi
    ORF Names:ORF3
    OrganismiPanicum mosaic virus (strain United States/Kansas 109S) (PMV)
    Taxonomic identifieri652599 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaePanicovirus
    Virus hostiMuhlenbergia [TaxID: 58090]
    Panicum virgatum (Switchgrass) [TaxID: 38727]
    ProteomesiUP000001665: Genome

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. T=3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, T=3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 242242Capsid proteinPRO_0000399481Add
    BLAST

    Interactioni

    Subunit structurei

    Homomultimer.Curated

    Structurei

    Secondary structure

    1
    242
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi57 – 7014
    Beta strandi72 – 743
    Beta strandi76 – 816
    Beta strandi90 – 934
    Helixi101 – 1077
    Beta strandi110 – 12415
    Beta strandi134 – 1407
    Helixi150 – 1534
    Beta strandi156 – 1616
    Beta strandi167 – 1704
    Beta strandi177 – 1793
    Helixi188 – 1925
    Helixi196 – 1994
    Helixi200 – 2023
    Beta strandi206 – 2116
    Beta strandi218 – 23417

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4FY1X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
    4FY2X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
    4FY3X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
    4FY4X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
    4FY5X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
    4FY6X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
    4FY7X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
    4FY8X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
    4FY9X-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
    4FYAX-ray2.901/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z1-242[»]
    ProteinModelPortaliP89036.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF00729. Viral_coat. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P89036-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNRNGATPTR GRGKRAIPNP PRRRARGKSV ERGSTPLQYV TTLGPSRPRM    50
    GQGQGWQKLS HEEIILQVNS STAADTIQTI PIIPRLSVPA GDKPIYSGSA 100
    PHLRTIGSAF AIHRWRALSF EWIPSCPTTT PGNLVLRFYP NYSTETPKTL 150
    TDLMDSESLV LVPSLSGKTY RPKIETRGNP PELRNIDATA FSALSDEDKG 200
    DYSVGRLVVG SSKQAVVIQL GLLRMRYSAE MRGATSISGV SA 242
    Length:242
    Mass (Da):26,355
    Last modified:May 1, 1997 - v1
    Checksum:i48734468E6E3A7D3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U55002 Genomic RNA. Translation: AAC97555.1.
    RefSeqiNP_068346.1. NC_002598.1.

    Genome annotation databases

    GeneIDi912244.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U55002 Genomic RNA. Translation: AAC97555.1 .
    RefSeqi NP_068346.1. NC_002598.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4FY1 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
    4FY2 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
    4FY3 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
    4FY4 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
    4FY5 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
    4FY6 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
    4FY7 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
    4FY8 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
    4FY9 X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
    4FYA X-ray 2.90 1/4/5/6/A/B/C/F/G/H/K/L/M/P/Q/R/U/V/W/Z/a/b/e/f/g/j/k/l/o/p/q/t/u/v/y/z 1-242 [» ]
    ProteinModelPortali P89036.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 912244.

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF00729. Viral_coat. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Nucleotide sequence and infectivity of a full-length cDNA clone of panicum mosaic virus."
      Turina M., Maruoka M., Monis J., Jackson A.O., Scholthof K.B.
      Virology 241:141-155(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiCAPSD_PMVK
    AccessioniPrimary (citable) accession number: P89036
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 5, 2010
    Last sequence update: May 1, 1997
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3