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Protein

Protein lsb5

Gene

lsb5

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Essential for the organization of the actin cytoskeleton, fluid phase endocytosis and vesicle trafficking.By similarity

GO - Biological processi

Keywordsi

Biological processEndocytosis

Names & Taxonomyi

Protein namesi
Recommended name:
Protein lsb5
Gene namesi
Name:lsb5
ORF Names:SPBC31F10.07
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC31F10.07
PomBaseiSPBC31F10.07 lsb5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003159651 – 304Protein lsb5Add BLAST304

Proteomic databases

MaxQBiP87308
PaxDbiP87308
PRIDEiP87308

PTM databases

iPTMnetiP87308

Interactioni

Protein-protein interaction databases

BioGridi276857, 34 interactors
STRINGi4896.SPBC31F10.07.1

Structurei

3D structure databases

ProteinModelPortaliP87308
SMRiP87308
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini20 – 149VHSPROSITE-ProRule annotationAdd BLAST130

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi248 – 283Ser-richAdd BLAST36

Sequence similaritiesi

Belongs to the LSB5 family.Curated

Phylogenomic databases

InParanoidiP87308
KOiK20524
OMAiNEENPMS
OrthoDBiEOG092C30PV
PhylomeDBiP87308

Family and domain databases

Gene3Di1.20.58.160, 1 hit
1.25.40.90, 1 hit
InterProiView protein in InterPro
IPR008942 ENTH_VHS
IPR038425 GAT_sf
IPR002014 VHS_dom
PfamiView protein in Pfam
PF00790 VHS, 1 hit
SMARTiView protein in SMART
SM00288 VHS, 1 hit
SUPFAMiSSF48464 SSF48464, 1 hit
PROSITEiView protein in PROSITE
PS50179 VHS, 1 hit

Sequencei

Sequence statusi: Complete.

P87308-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGIFSETVPI TAVTTYIDRL TSRDTDDEDL SGIVQLSEAV NLTVTGPREA
60 70 80 90 100
SRTLRKKLKY STPHEQVRAL VILQALIENA GSHFLQNFSD EKLEDRMLQC
110 120 130 140 150
ATNSEYSKPV RKRAIHMIKL WHNDYSNVRG MESMSSLVSR LPQRQSSASH
160 170 180 190 200
SEQPTINLKK VGPILERLIA SSSMAATNLS NSLVRINPNT ENPAKNKQIM
210 220 230 240 250
VYYVDCKRAH RSLLRYIQAI QDEMWLANLL KANDEIVTAI DAFKEKCSEN
260 270 280 290 300
SDYSSDSGSY SSSYSRHLDD RASYISRSSS GGSNAQRSED LDVNNPFGDH

NRLE
Length:304
Mass (Da):34,195
Last modified:July 1, 1997 - v1
Checksum:iE703692C9D5584A6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAB10084.1
PIRiT40210
RefSeqiNP_596569.1, NM_001022490.2

Genome annotation databases

EnsemblFungiiSPBC31F10.07.1; SPBC31F10.07.1:pep; SPBC31F10.07
GeneIDi2540327
KEGGispo:SPBC31F10.07

Similar proteinsi

Entry informationi

Entry nameiLSB5_SCHPO
AccessioniPrimary (citable) accession number: P87308
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 1, 1997
Last modified: March 28, 2018
This is version 103 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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