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P87262

- RL34A_YEAST

UniProt

P87262 - RL34A_YEAST

Protein

60S ribosomal protein L34-A

Gene

RPL34A

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: SGD

    GO - Biological processi

    1. cytoplasmic translation Source: SGD
    2. ribosome biogenesis Source: SGD

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciYEAST:G3O-30350-MONOMER.
    ReactomeiREACT_188965. SRP-dependent cotranslational protein targeting to membrane.
    REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
    REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_217188. Formation of a pool of free 40S subunits.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    60S ribosomal protein L34-A
    Gene namesi
    Name:RPL34A
    Ordered Locus Names:YER056C-A
    ORF Names:YER056BC
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome V

    Organism-specific databases

    CYGDiYER056c-a.
    SGDiS000002135. RPL34A.

    Subcellular locationi

    Cytoplasm 1 Publication

    GO - Cellular componenti

    1. preribosome, large subunit precursor Source: SGD
    2. ribosome Source: UniProtKB-KW

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 12112160S ribosomal protein L34-APRO_0000131845Add
    BLAST

    Proteomic databases

    MaxQBiP87262.
    PaxDbiP87262.
    PRIDEiP87262.

    Expressioni

    Gene expression databases

    GenevestigatoriP87262.

    Interactioni

    Subunit structurei

    Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

    Protein-protein interaction databases

    BioGridi36797. 27 interactions.
    IntActiP87262. 13 interactions.
    MINTiMINT-8285618.
    STRINGi4932.YER056C-A.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VW8electron microscopy6.10h1-121[»]
    1VWUelectron microscopy6.10h1-121[»]
    3IZSelectron microscopy-i1-118[»]
    3J65electron microscopy8.70f1-121[»]
    3U5EX-ray3.00g1-121[»]
    3U5IX-ray3.00g1-121[»]
    4B6Aelectron microscopy8.10g1-121[»]
    4BYNelectron microscopy4.30g2-121[»]
    4BYUelectron microscopy6.60g2-121[»]
    4CUWelectron microscopy3.70g1-121[»]
    ProteinModelPortaliP87262.
    SMRiP87262. Positions 2-113.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L34e family.Curated

    Phylogenomic databases

    eggNOGiCOG2174.
    GeneTreeiENSGT00390000008294.
    HOGENOMiHOG000216922.
    KOiK02915.
    OMAiSERPRMC.
    OrthoDBiEOG76TB4F.

    Family and domain databases

    InterProiIPR008195. Ribosomal_L34Ae.
    IPR018065. Ribosomal_L34e_CS.
    [Graphical view]
    PANTHERiPTHR10759. PTHR10759. 1 hit.
    PfamiPF01199. Ribosomal_L34e. 1 hit.
    [Graphical view]
    PRINTSiPR01250. RIBOSOMALL34.
    PROSITEiPS01145. RIBOSOMAL_L34E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P87262-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAQRVTFRRR NPYNTRSNKI KVVKTPGGIL RAQHVKKLAT RPKCGDCGSA    50
    LQGISTLRPR QYATVSKTHK TVSRAYGGSR CANCVKERII RAFLIEEQKI 100
    VKKVVKEQTE AAKKSEKKAK K 121
    Length:121
    Mass (Da):13,639
    Last modified:July 1, 1997 - v1
    Checksum:iF3315816CD85ACEA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U18813 Genomic DNA. Translation: AAB64609.1.
    BK006939 Genomic DNA. Translation: DAA07714.1.
    PIRiS53549.
    RefSeqiNP_010977.2. NM_001180036.1.

    Genome annotation databases

    EnsemblFungiiYER056C-A; YER056C-A; YER056C-A.
    GeneIDi856784.
    KEGGisce:YER056C-A.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U18813 Genomic DNA. Translation: AAB64609.1 .
    BK006939 Genomic DNA. Translation: DAA07714.1 .
    PIRi S53549.
    RefSeqi NP_010977.2. NM_001180036.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VW8 electron microscopy 6.10 h 1-121 [» ]
    1VWU electron microscopy 6.10 h 1-121 [» ]
    3IZS electron microscopy - i 1-118 [» ]
    3J65 electron microscopy 8.70 f 1-121 [» ]
    3U5E X-ray 3.00 g 1-121 [» ]
    3U5I X-ray 3.00 g 1-121 [» ]
    4B6A electron microscopy 8.10 g 1-121 [» ]
    4BYN electron microscopy 4.30 g 2-121 [» ]
    4BYU electron microscopy 6.60 g 2-121 [» ]
    4CUW electron microscopy 3.70 g 1-121 [» ]
    ProteinModelPortali P87262.
    SMRi P87262. Positions 2-113.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 36797. 27 interactions.
    IntActi P87262. 13 interactions.
    MINTi MINT-8285618.
    STRINGi 4932.YER056C-A.

    Proteomic databases

    MaxQBi P87262.
    PaxDbi P87262.
    PRIDEi P87262.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YER056C-A ; YER056C-A ; YER056C-A .
    GeneIDi 856784.
    KEGGi sce:YER056C-A.

    Organism-specific databases

    CYGDi YER056c-a.
    SGDi S000002135. RPL34A.

    Phylogenomic databases

    eggNOGi COG2174.
    GeneTreei ENSGT00390000008294.
    HOGENOMi HOG000216922.
    KOi K02915.
    OMAi SERPRMC.
    OrthoDBi EOG76TB4F.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-30350-MONOMER.
    Reactomei REACT_188965. SRP-dependent cotranslational protein targeting to membrane.
    REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
    REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_217188. Formation of a pool of free 40S subunits.

    Miscellaneous databases

    NextBioi 983000.

    Gene expression databases

    Genevestigatori P87262.

    Family and domain databases

    InterProi IPR008195. Ribosomal_L34Ae.
    IPR018065. Ribosomal_L34e_CS.
    [Graphical view ]
    PANTHERi PTHR10759. PTHR10759. 1 hit.
    Pfami PF01199. Ribosomal_L34e. 1 hit.
    [Graphical view ]
    PRINTSi PR01250. RIBOSOMALL34.
    PROSITEi PS01145. RIBOSOMAL_L34E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    2. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    3. "The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae."
      Planta R.J., Mager W.H.
      Yeast 14:471-477(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NOMENCLATURE, SUBUNIT.
    4. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    5. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
    6. "Crystal structure of the eukaryotic ribosome."
      Ben-Shem A., Jenner L., Yusupova G., Yusupov M.
      Science 330:1203-1209(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (4.0 ANGSTROMS) OF 80S RIBOSOME.
    7. Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF 80S RIBOSOME.

    Entry informationi

    Entry nameiRL34A_YEAST
    AccessioniPrimary (citable) accession number: P87262
    Secondary accession number(s): D3DLW0, Q03189
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 15, 1998
    Last sequence update: July 1, 1997
    Last modified: October 1, 2014
    This is version 100 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Present with 23600 molecules/cell in log phase SD medium.1 Publication
    There are 2 genes for L34 in yeast.

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families
    4. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    5. Yeast chromosome V
      Yeast (Saccharomyces cerevisiae) chromosome V: entries and gene names

    External Data

    Dasty 3