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P84612

- SODF_PSEHT

UniProt

P84612 - SODF_PSEHT

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Protein
Superoxide dismutase [Fe]
Gene
sodB, PSHAa1215
Organism
Pseudoalteromonas haloplanktis (strain TAC 125)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.1 Publication

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.1 Publication

Cofactori

Binds 1 iron ion per subunit.1 Publication

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi26 – 261Iron By similarityBy similarity
Metal bindingi73 – 731Iron By similarityBy similarity
Metal bindingi157 – 1571Iron By similarityBy similarity
Metal bindingi161 – 1611Iron By similarityBy similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

Iron, Metal-binding

Enzyme and pathway databases

BioCyciPHAL326442:GJIU-1249-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Fe] (EC:1.15.1.1)
Gene namesi
Name:sodB
Ordered Locus Names:PSHAa1215
OrganismiPseudoalteromonas haloplanktis (strain TAC 125)
Taxonomic identifieri326442 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas
ProteomesiUP000006843: Chromosome I

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 192192Superoxide dismutase [Fe]
PRO_0000159970Add
BLAST

Interactioni

Subunit structurei

Homodimer By similarity.By similarity

Protein-protein interaction databases

STRINGi326442.PSHAa1215.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni11 – 177
Helixi20 – 267
Turni27 – 293
Helixi30 – 4112
Turni46 – 494
Helixi52 – 565
Helixi61 – 7818
Helixi90 – 10011
Helixi103 – 11513
Beta strandi119 – 1279
Beta strandi133 – 1397
Helixi144 – 1463
Beta strandi151 – 1577
Helixi160 – 1623
Helixi164 – 1674
Helixi171 – 18111
Helixi184 – 1918

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3LIOX-ray1.50A/B1-192[»]
3LJ9X-ray2.10A/B1-192[»]
3LJFX-ray2.10A/B/C/D1-192[»]
4L2AX-ray2.06A/B1-192[»]
4L2BX-ray1.97A/B1-192[»]
4L2CX-ray1.66A/B/C/D1-192[»]
4L2DX-ray2.07A/B/C/D1-192[»]
ProteinModelPortaliP84612.
SMRiP84612. Positions 1-191.

Miscellaneous databases

EvolutionaryTraceiP84612.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0605.
HOGENOMiHOG000013584.
KOiK04564.
OMAiWTWLVKG.
OrthoDBiEOG63NMNT.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P84612-1 [UniParc]FASTAAdd to Basket

« Hide

AFELPSLPYA IDALEPHISK ETLEFHHGKH HNTYVVKLNG LIPGTKFENK    50
SLEEIVCSSD GGVFNNAAQI WNHTFYWNSL SPNGGGAPTG AVADAINAKW 100
GSFDAFKEAL NDKAVNNFGS SWTWLVKLAD GSLDIVNTSN AATPLTDDGV 150
TPILTVDLWE HAYYIDYRNV RPDYLKGFWS LVNWEFANAN FA 192
Length:192
Mass (Da):21,251
Last modified:August 16, 2005 - v1
Checksum:i53500221A8568E27
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CR954246 Genomic DNA. Translation: CAI86290.1.
RefSeqiYP_339733.1. NC_007481.1.

Genome annotation databases

EnsemblBacteriaiCAI86290; CAI86290; PSHAa1215.
GeneIDi3710743.
KEGGipha:PSHAa1215.
PATRICi32296007. VBIPseHal105694_1169.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CR954246 Genomic DNA. Translation: CAI86290.1 .
RefSeqi YP_339733.1. NC_007481.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3LIO X-ray 1.50 A/B 1-192 [» ]
3LJ9 X-ray 2.10 A/B 1-192 [» ]
3LJF X-ray 2.10 A/B/C/D 1-192 [» ]
4L2A X-ray 2.06 A/B 1-192 [» ]
4L2B X-ray 1.97 A/B 1-192 [» ]
4L2C X-ray 1.66 A/B/C/D 1-192 [» ]
4L2D X-ray 2.07 A/B/C/D 1-192 [» ]
ProteinModelPortali P84612.
SMRi P84612. Positions 1-191.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 326442.PSHAa1215.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAI86290 ; CAI86290 ; PSHAa1215 .
GeneIDi 3710743.
KEGGi pha:PSHAa1215.
PATRICi 32296007. VBIPseHal105694_1169.

Phylogenomic databases

eggNOGi COG0605.
HOGENOMi HOG000013584.
KOi K04564.
OMAi WTWLVKG.
OrthoDBi EOG63NMNT.

Enzyme and pathway databases

BioCyci PHAL326442:GJIU-1249-MONOMER.

Miscellaneous databases

EvolutionaryTracei P84612.

Family and domain databases

InterProi IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view ]
PANTHERi PTHR11404. PTHR11404. 1 hit.
Pfami PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF000349. SODismutase. 1 hit.
PRINTSi PR01703. MNSODISMTASE.
SUPFAMi SSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEi PS00088. SOD_MN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Psychrophilic superoxide dismutase from Pseudoalteromonas haloplanktis: biochemical characterization and identification of a highly reactive cysteine residue."
    Castellano I., Di Maro A., Ruocco M.R., Chambery A., Parente A., Di Martino M.T., Parlato G., Masullo M., De Vendittis E.
    Biochimie 88:1377-1389(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE, FUNCTION, CATALYTIC ACTIVITY, COFACTOR.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TAC 125.

Entry informationi

Entry nameiSODF_PSEHT
AccessioniPrimary (citable) accession number: P84612
Secondary accession number(s): Q3IKP4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: August 16, 2005
Last modified: July 9, 2014
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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