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P84612

- SODF_PSEHT

UniProt

P84612 - SODF_PSEHT

Protein

Superoxide dismutase [Fe]

Gene

sodB

Organism
Pseudoalteromonas haloplanktis (strain TAC 125)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 63 (01 Oct 2014)
      Sequence version 1 (16 Aug 2005)
      Previous versions | rss
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    Functioni

    Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.1 Publication

    Catalytic activityi

    2 superoxide + 2 H+ = O2 + H2O2.1 Publication

    Cofactori

    Binds 1 iron ion per subunit.1 Publication

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi26 – 261IronBy similarity
    Metal bindingi73 – 731IronBy similarity
    Metal bindingi157 – 1571IronBy similarity
    Metal bindingi161 – 1611IronBy similarity

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. superoxide dismutase activity Source: UniProtKB-EC

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Ligandi

    Iron, Metal-binding

    Enzyme and pathway databases

    BioCyciPHAL326442:GJIU-1249-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutase [Fe] (EC:1.15.1.1)
    Gene namesi
    Name:sodBImported
    Ordered Locus Names:PSHAa1215
    OrganismiPseudoalteromonas haloplanktis (strain TAC 125)
    Taxonomic identifieri326442 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas
    ProteomesiUP000006843: Chromosome I

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 192192Superoxide dismutase [Fe]PRO_0000159970Add
    BLAST

    Interactioni

    Subunit structurei

    Homodimer.By similarity

    Protein-protein interaction databases

    STRINGi326442.PSHAa1215.

    Structurei

    Secondary structure

    1
    192
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Turni11 – 177
    Helixi20 – 267
    Turni27 – 293
    Helixi30 – 4112
    Turni46 – 494
    Helixi52 – 565
    Helixi61 – 7818
    Helixi90 – 10011
    Helixi103 – 11513
    Beta strandi119 – 1279
    Beta strandi133 – 1397
    Helixi144 – 1463
    Beta strandi151 – 1577
    Helixi160 – 1623
    Helixi164 – 1674
    Helixi171 – 18111
    Helixi184 – 1918

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3LIOX-ray1.50A/B1-192[»]
    3LJ9X-ray2.10A/B1-192[»]
    3LJFX-ray2.10A/B/C/D1-192[»]
    4L2AX-ray2.06A/B1-192[»]
    4L2BX-ray1.97A/B1-192[»]
    4L2CX-ray1.66A/B/C/D1-192[»]
    4L2DX-ray2.07A/B/C/D1-192[»]
    ProteinModelPortaliP84612.
    SMRiP84612. Positions 1-191.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP84612.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the iron/manganese superoxide dismutase family.Sequence Analysis

    Phylogenomic databases

    eggNOGiCOG0605.
    HOGENOMiHOG000013584.
    KOiK04564.
    OMAiWTWLVKG.
    OrthoDBiEOG63NMNT.

    Family and domain databases

    InterProiIPR001189. Mn/Fe_SOD.
    IPR019833. Mn/Fe_SOD_BS.
    IPR019832. Mn/Fe_SOD_C.
    IPR019831. Mn/Fe_SOD_N.
    [Graphical view]
    PANTHERiPTHR11404. PTHR11404. 1 hit.
    PfamiPF02777. Sod_Fe_C. 1 hit.
    PF00081. Sod_Fe_N. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000349. SODismutase. 1 hit.
    PRINTSiPR01703. MNSODISMTASE.
    SUPFAMiSSF46609. SSF46609. 1 hit.
    SSF54719. SSF54719. 1 hit.
    PROSITEiPS00088. SOD_MN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P84612-1 [UniParc]FASTAAdd to Basket

    « Hide

    AFELPSLPYA IDALEPHISK ETLEFHHGKH HNTYVVKLNG LIPGTKFENK    50
    SLEEIVCSSD GGVFNNAAQI WNHTFYWNSL SPNGGGAPTG AVADAINAKW 100
    GSFDAFKEAL NDKAVNNFGS SWTWLVKLAD GSLDIVNTSN AATPLTDDGV 150
    TPILTVDLWE HAYYIDYRNV RPDYLKGFWS LVNWEFANAN FA 192
    Length:192
    Mass (Da):21,251
    Last modified:August 16, 2005 - v1
    Checksum:i53500221A8568E27
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CR954246 Genomic DNA. Translation: CAI86290.1.
    RefSeqiYP_339733.1. NC_007481.1.

    Genome annotation databases

    EnsemblBacteriaiCAI86290; CAI86290; PSHAa1215.
    GeneIDi3710743.
    KEGGipha:PSHAa1215.
    PATRICi32296007. VBIPseHal105694_1169.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CR954246 Genomic DNA. Translation: CAI86290.1 .
    RefSeqi YP_339733.1. NC_007481.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3LIO X-ray 1.50 A/B 1-192 [» ]
    3LJ9 X-ray 2.10 A/B 1-192 [» ]
    3LJF X-ray 2.10 A/B/C/D 1-192 [» ]
    4L2A X-ray 2.06 A/B 1-192 [» ]
    4L2B X-ray 1.97 A/B 1-192 [» ]
    4L2C X-ray 1.66 A/B/C/D 1-192 [» ]
    4L2D X-ray 2.07 A/B/C/D 1-192 [» ]
    ProteinModelPortali P84612.
    SMRi P84612. Positions 1-191.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 326442.PSHAa1215.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAI86290 ; CAI86290 ; PSHAa1215 .
    GeneIDi 3710743.
    KEGGi pha:PSHAa1215.
    PATRICi 32296007. VBIPseHal105694_1169.

    Phylogenomic databases

    eggNOGi COG0605.
    HOGENOMi HOG000013584.
    KOi K04564.
    OMAi WTWLVKG.
    OrthoDBi EOG63NMNT.

    Enzyme and pathway databases

    BioCyci PHAL326442:GJIU-1249-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P84612.

    Family and domain databases

    InterProi IPR001189. Mn/Fe_SOD.
    IPR019833. Mn/Fe_SOD_BS.
    IPR019832. Mn/Fe_SOD_C.
    IPR019831. Mn/Fe_SOD_N.
    [Graphical view ]
    PANTHERi PTHR11404. PTHR11404. 1 hit.
    Pfami PF02777. Sod_Fe_C. 1 hit.
    PF00081. Sod_Fe_N. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000349. SODismutase. 1 hit.
    PRINTSi PR01703. MNSODISMTASE.
    SUPFAMi SSF46609. SSF46609. 1 hit.
    SSF54719. SSF54719. 1 hit.
    PROSITEi PS00088. SOD_MN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Psychrophilic superoxide dismutase from Pseudoalteromonas haloplanktis: biochemical characterization and identification of a highly reactive cysteine residue."
      Castellano I., Di Maro A., Ruocco M.R., Chambery A., Parente A., Di Martino M.T., Parlato G., Masullo M., De Vendittis E.
      Biochimie 88:1377-1389(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE, FUNCTION, CATALYTIC ACTIVITY, COFACTOR.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: TAC 125.

    Entry informationi

    Entry nameiSODF_PSEHT
    AccessioniPrimary (citable) accession number: P84612
    Secondary accession number(s): Q3IKP4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 16, 2005
    Last sequence update: August 16, 2005
    Last modified: October 1, 2014
    This is version 63 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3