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P84612 (SODF_PSEHT) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Superoxide dismutase [Fe]
EC=1.15.1.1
Gene names
Name:sodB
Ordered Locus Names:PSHAa1215
OrganismPseudoalteromonas haloplanktis (strain TAC 125) [Complete proteome] [HAMAP]
Taxonomic identifier326442 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas ›

Protein attributes

Sequence length192 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems. Ref.1

Catalytic activity

2 superoxide + 2 H+ = O2 + H2O2. Ref.1

Cofactor

Binds 1 iron ion per subunit. Ref.1

Subunit structure

Homodimer By similarity. UniProtKB P09157

Sequence similarities

Belongs to the iron/manganese superoxide dismutase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 192192Superoxide dismutase [Fe]
PRO_0000159970

Sites

Metal binding261Iron By similarity UniProtKB P09157
Metal binding731Iron By similarity UniProtKB P09157
Metal binding1571Iron By similarity UniProtKB P09157
Metal binding1611Iron By similarity UniProtKB P09157

Secondary structure

1 ................................. 192
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P84612 [UniParc].

Last modified August 16, 2005. Version 1.
Checksum: 53500221A8568E27

FASTA19221,251
        10         20         30         40         50         60 
AFELPSLPYA IDALEPHISK ETLEFHHGKH HNTYVVKLNG LIPGTKFENK SLEEIVCSSD 

        70         80         90        100        110        120 
GGVFNNAAQI WNHTFYWNSL SPNGGGAPTG AVADAINAKW GSFDAFKEAL NDKAVNNFGS 

       130        140        150        160        170        180 
SWTWLVKLAD GSLDIVNTSN AATPLTDDGV TPILTVDLWE HAYYIDYRNV RPDYLKGFWS 

       190 
LVNWEFANAN FA

« Hide

References

« Hide 'large scale' references
[1]"Psychrophilic superoxide dismutase from Pseudoalteromonas haloplanktis: biochemical characterization and identification of a highly reactive cysteine residue."
Castellano I., Di Maro A., Ruocco M.R., Chambery A., Parente A., Di Martino M.T., Parlato G., Masullo M., De Vendittis E.
Biochimie 88:1377-1389(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE, FUNCTION, CATALYTIC ACTIVITY, COFACTOR.
[2]"Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125."
Medigue C., Krin E., Pascal G., Barbe V., Bernsel A., Bertin P.N., Cheung F., Cruveiller S., D'Amico S., Duilio A., Fang G., Feller G., Ho C., Mangenot S., Marino G., Nilsson J., Parrilli E., Rocha E.P.C. expand/collapse author list , Rouy Z., Sekowska A., Tutino M.L., Vallenet D., von Heijne G., Danchin A.
Genome Res. 15:1325-1335(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: TAC 125.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CR954246 Genomic DNA. Translation: CAI86290.1.
RefSeqYP_339733.1. NC_007481.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3LIOX-ray1.50A/B1-192[»]
3LJ9X-ray2.10A/B1-192[»]
3LJFX-ray2.10A/B/C/D1-192[»]
ProteinModelPortalP84612.
SMRP84612. Positions 1-191.
ModBaseSearch...

Protein-protein interaction databases

STRING326442.PSHAa1215.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAI86290; CAI86290; PSHAa1215.
GeneID3710743.
KEGGpha:PSHAa1215.
PATRIC32296007. VBIPseHal105694_1169.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0605.
HOGENOMHOG000013584.
KOK04564.
OMANCMAPNG.

Enzyme and pathway databases

BioCycPHAL326442:GJIU-1249-MONOMER.

Family and domain databases

InterProIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERPTHR11404. PTHR11404. 1 hit.
PfamPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFPIRSF000349. SODismutase. 1 hit.
PRINTSPR01703. MNSODISMTASE.
SUPFAMSSF46609. SODismutase. 1 hit.
SSF54719. SODismutase. 1 hit.
PROSITEPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP84612.

Entry information

Entry nameSODF_PSEHT
AccessionPrimary (citable) accession number: P84612
Secondary accession number(s): Q3IKP4
Entry history
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: August 16, 2005
Last modified: May 1, 2013
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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