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P84612

- SODF_PSEHT

UniProt

P84612 - SODF_PSEHT

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Protein

Superoxide dismutase [Fe]

Gene

sodB

Organism
Pseudoalteromonas haloplanktis (strain TAC 125)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.1 Publication

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.1 Publication

Cofactori

Fe cation1 PublicationNote: Binds 1 Fe cation per subunit.1 Publication

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi26 – 261IronBy similarity
Metal bindingi73 – 731IronBy similarity
Metal bindingi157 – 1571IronBy similarity
Metal bindingi161 – 1611IronBy similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

Iron, Metal-binding

Enzyme and pathway databases

BioCyciPHAL326442:GJIU-1249-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Fe] (EC:1.15.1.1)
Gene namesi
Name:sodBImported
Ordered Locus Names:PSHAa1215
OrganismiPseudoalteromonas haloplanktis (strain TAC 125)
Taxonomic identifieri326442 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas
ProteomesiUP000006843: Chromosome I

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 192192Superoxide dismutase [Fe]PRO_0000159970Add
BLAST

Interactioni

Subunit structurei

Homodimer.By similarity

Protein-protein interaction databases

STRINGi326442.PSHAa1215.

Structurei

Secondary structure

1
192
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni11 – 177Combined sources
Helixi20 – 267Combined sources
Turni27 – 293Combined sources
Helixi30 – 4112Combined sources
Turni46 – 494Combined sources
Helixi52 – 565Combined sources
Helixi61 – 7818Combined sources
Helixi90 – 10011Combined sources
Helixi103 – 11513Combined sources
Beta strandi119 – 1279Combined sources
Beta strandi133 – 1397Combined sources
Helixi144 – 1463Combined sources
Beta strandi151 – 1577Combined sources
Helixi160 – 1623Combined sources
Helixi164 – 1674Combined sources
Helixi171 – 18111Combined sources
Helixi184 – 1918Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3LIOX-ray1.50A/B1-192[»]
3LJ9X-ray2.10A/B1-192[»]
3LJFX-ray2.10A/B/C/D1-192[»]
4L2AX-ray2.06A/B1-192[»]
4L2BX-ray1.97A/B1-192[»]
4L2CX-ray1.66A/B/C/D1-192[»]
4L2DX-ray2.07A/B/C/D1-192[»]
ProteinModelPortaliP84612.
SMRiP84612. Positions 1-191.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP84612.

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.Sequence Analysis

Phylogenomic databases

eggNOGiCOG0605.
HOGENOMiHOG000013584.
KOiK04564.
OMAiWTWLVKG.
OrthoDBiEOG63NMNT.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P84612-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
AFELPSLPYA IDALEPHISK ETLEFHHGKH HNTYVVKLNG LIPGTKFENK
60 70 80 90 100
SLEEIVCSSD GGVFNNAAQI WNHTFYWNSL SPNGGGAPTG AVADAINAKW
110 120 130 140 150
GSFDAFKEAL NDKAVNNFGS SWTWLVKLAD GSLDIVNTSN AATPLTDDGV
160 170 180 190
TPILTVDLWE HAYYIDYRNV RPDYLKGFWS LVNWEFANAN FA
Length:192
Mass (Da):21,251
Last modified:August 16, 2005 - v1
Checksum:i53500221A8568E27
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR954246 Genomic DNA. Translation: CAI86290.1.
RefSeqiYP_339733.1. NC_007481.1.

Genome annotation databases

EnsemblBacteriaiCAI86290; CAI86290; PSHAa1215.
GeneIDi3710743.
KEGGipha:PSHAa1215.
PATRICi32296007. VBIPseHal105694_1169.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR954246 Genomic DNA. Translation: CAI86290.1 .
RefSeqi YP_339733.1. NC_007481.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3LIO X-ray 1.50 A/B 1-192 [» ]
3LJ9 X-ray 2.10 A/B 1-192 [» ]
3LJF X-ray 2.10 A/B/C/D 1-192 [» ]
4L2A X-ray 2.06 A/B 1-192 [» ]
4L2B X-ray 1.97 A/B 1-192 [» ]
4L2C X-ray 1.66 A/B/C/D 1-192 [» ]
4L2D X-ray 2.07 A/B/C/D 1-192 [» ]
ProteinModelPortali P84612.
SMRi P84612. Positions 1-191.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 326442.PSHAa1215.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAI86290 ; CAI86290 ; PSHAa1215 .
GeneIDi 3710743.
KEGGi pha:PSHAa1215.
PATRICi 32296007. VBIPseHal105694_1169.

Phylogenomic databases

eggNOGi COG0605.
HOGENOMi HOG000013584.
KOi K04564.
OMAi WTWLVKG.
OrthoDBi EOG63NMNT.

Enzyme and pathway databases

BioCyci PHAL326442:GJIU-1249-MONOMER.

Miscellaneous databases

EvolutionaryTracei P84612.

Family and domain databases

InterProi IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view ]
PANTHERi PTHR11404. PTHR11404. 1 hit.
Pfami PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF000349. SODismutase. 1 hit.
PRINTSi PR01703. MNSODISMTASE.
SUPFAMi SSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEi PS00088. SOD_MN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Psychrophilic superoxide dismutase from Pseudoalteromonas haloplanktis: biochemical characterization and identification of a highly reactive cysteine residue."
    Castellano I., Di Maro A., Ruocco M.R., Chambery A., Parente A., Di Martino M.T., Parlato G., Masullo M., De Vendittis E.
    Biochimie 88:1377-1389(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE, FUNCTION, CATALYTIC ACTIVITY, COFACTOR.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TAC 125.

Entry informationi

Entry nameiSODF_PSEHT
AccessioniPrimary (citable) accession number: P84612
Secondary accession number(s): Q3IKP4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: August 16, 2005
Last modified: November 26, 2014
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3