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P84254 (NCAP_WYHV) Reviewed, UniProtKB/Swiss-Prot

Last modified October 16, 2013. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Nucleoprotein
Alternative name(s):
Coat protein
Short name=CP
Nucleocapsid protein
Short name=Protein N
Protein pc3
Gene names
ORF Names:pc3
OrganismWheat yellow head virus (WYHV)
Taxonomic identifier299385 [NCBI]
Taxonomic lineageVirusesssRNA negative-strand virusesTenuivirus
Virus hostTriticum aestivum (Wheat) [TaxID: 4565]

Protein attributes

Sequence length314 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Encapsidates the genome, protecting it from nucleases. The encapsidated genomic RNA is termed the nucleocapsid (NC), and serves as template for viral transcription and replication By similarity.

Subcellular location

Virion. Host cytoplasm By similarity.

Sequence similarities

Belongs to the tenuiviruses nucleocapsid protein family.

Caution

This protein is few amino acids shorter in its N-terminus than to all other tenuiviruses. It has been described as N-acetylated unlike all other negative stranded virus nucleoproteins. Since no genome sequence is available for this virus, the N-acetylmethionine may be an artifact of protein sequencing.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 314314Nucleoprotein
PRO_0000222523

Regions

Region198 – 314117RNA-binding By similarity
Compositional bias203 – 2064Poly-Lys

Amino acid modifications

Modified residue11N-acetylmethionine; by host Potential Ref.1

Sequences

Sequence LengthMass (Da)Tools
P84254 [UniParc].

Last modified December 7, 2004. Version 1.
Checksum: 9D4EC09929E30B59

FASTA31435,046
        10         20         30         40         50         60 
MTSMVEIQNE IERVTALAVK YISENKDSLV VFVGQIDYNG YDAGKLLSIL KEKAKGRDFG 

        70         80         90        100        110        120 
RDLCYLLVMR YTRGTGFVRD VRKKIKVAAG ADTAYEIVTH YGVVQSVGDN ADAITLGRLA 

       130        140        150        160        170        180 
ALFPYVSMNI VKSVSTGAKL ALDTSDLGTS GLDILLWDFV PQFINLDSVD APYCNKKNTS 

       190        200        210        220        230        240 
NILFSLHLLQ GALTTRKTMP DQKKKKDNLT TDFDLLKYTA ELLVITCSAK NLTDNKKSTY 

       250        260        270        280        290        300 
RKKLVEPFRE NEDYKADFWT ALGKLSTGCL KKMKKDAQNY LKDRTTVLKL MVDNCSGTDD 

       310 
EAAKAIKDYL TVDD 

« Hide

References

[1]"Association of a virus with wheat displaying yellow head disease symptoms in the Great Plains."
Seifers D.L., Harvey T.L., Martin T.J., Haber S., She Y.-M., Ens W., Standing K.G., Salomon R., Gera A.
Plant Dis. 89:888-895(2005) [AGRICOLA] [Europe PMC]
Cited for: PROTEIN SEQUENCE, ACETYLATION AT MET-1.

Cross-references

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR009522. Capsid_Phlebovir/Tenuivir.
IPR008864. Nucleocapsid_Tenuivirus.
[Graphical view]
PfamPF05733. Tenui_N. 1 hit.
[Graphical view]
PIRSFPIRSF004108. Tenuivirus_N. 1 hit.
ProtoNetSearch...

Entry information

Entry nameNCAP_WYHV
AccessionPrimary (citable) accession number: P84254
Entry history
Integrated into UniProtKB/Swiss-Prot: December 7, 2004
Last sequence update: December 7, 2004
Last modified: October 16, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families