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P84244

- H33_MOUSE

UniProt

P84244 - H33_MOUSE

Protein

Histone H3.3

Gene

H3f3a

more
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sitei32 – 321Interaction with ZMYND11By similarity

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. brain development Source: Ensembl
    2. nucleosome assembly Source: InterPro
    3. response to hormone Source: Ensembl

    Keywords - Ligandi

    DNA-binding

    Enzyme and pathway databases

    ReactomeiREACT_188970. Oxidative Stress Induced Senescence.
    REACT_196580. Condensation of Prophase Chromosomes.
    REACT_198563. Amyloids.
    REACT_198626. Meiotic synapsis.
    REACT_198629. Meiotic recombination.
    REACT_198649. Factors involved in megakaryocyte development and platelet production.
    REACT_200667. NoRC negatively regulates rRNA expression.
    REACT_206033. Senescence-Associated Secretory Phenotype (SASP).
    REACT_214440. NoRC negatively regulates rRNA expression.
    REACT_216539. formation of the beta-catenin:TCF transactivating complex.
    REACT_222475. PRC2 methylates histones and DNA.
    REACT_224328. SIRT1 negatively regulates rRNA Expression.
    REACT_226917. HATs acetylate histones.
    REACT_27235. Meiotic Recombination.
    REACT_75800. Meiotic Synapsis.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Histone H3.3
    Gene namesi
    Name:H3f3a
    Synonyms:H3.3a
    AND
    Name:H3f3b
    Synonyms:H3.3b
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 11

    Organism-specific databases

    MGIiMGI:1097686. H3f3a.
    MGI:1101768. H3f3b.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleoplasm Source: Reactome
    2. nucleosome Source: UniProtKB-KW

    Keywords - Cellular componenti

    Chromosome, Nucleosome core, Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 136135Histone H3.3PRO_0000221251Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei3 – 31Asymmetric dimethylarginine; by PRMT6; alternateBy similarity
    Modified residuei3 – 31Citrulline; alternateBy similarity
    Modified residuei4 – 41Phosphothreonine; by GSG21 Publication
    Modified residuei5 – 51Allysine; alternateBy similarity
    Modified residuei5 – 51N6,N6,N6-trimethyllysine; alternate1 Publication
    Modified residuei5 – 51N6,N6-dimethyllysine; alternate1 Publication
    Modified residuei5 – 51N6-acetyllysine; alternate1 Publication
    Modified residuei5 – 51N6-crotonyllysine; alternate1 Publication
    Modified residuei5 – 51N6-methyllysine; alternate1 Publication
    Modified residuei7 – 71Phosphothreonine; by PKCBy similarity
    Modified residuei9 – 91Citrulline; alternate1 Publication
    Modified residuei9 – 91Symmetric dimethylarginine; by PRMT5; alternate1 Publication
    Modified residuei10 – 101N6,N6,N6-trimethyllysine; alternate2 Publications
    Modified residuei10 – 101N6,N6-dimethyllysine; alternate2 Publications
    Modified residuei10 – 101N6-acetyllysine; alternate2 Publications
    Modified residuei10 – 101N6-crotonyllysine; alternate1 Publication
    Modified residuei10 – 101N6-methyllysine; alternate2 Publications
    Modified residuei11 – 111Phosphoserine; by AURKB, AURKC, RPS6KA3, RPS6KA4 and RPS6KA55 Publications
    Modified residuei12 – 121Phosphothreonine; by PKCBy similarity
    Modified residuei15 – 151N6-acetyllysine3 Publications
    Modified residuei18 – 181Asymmetric dimethylarginine; by CARM1; alternate3 Publications
    Modified residuei18 – 181Citrulline; alternate1 Publication
    Modified residuei19 – 191N6-acetyllysine; alternate3 Publications
    Modified residuei19 – 191N6-crotonyllysine; alternate1 Publication
    Modified residuei19 – 191N6-methyllysine; alternate1 Publication
    Modified residuei24 – 241N6-acetyllysine; alternate3 Publications
    Modified residuei24 – 241N6-crotonyllysine; alternate1 Publication
    Modified residuei24 – 241N6-methyllysine; alternate1 Publication
    Modified residuei27 – 271CitrullineBy similarity
    Modified residuei28 – 281N6,N6,N6-trimethyllysine; alternate2 Publications
    Modified residuei28 – 281N6,N6-dimethyllysine; alternate2 Publications
    Modified residuei28 – 281N6-acetyllysine; alternate1 Publication
    Modified residuei28 – 281N6-crotonyllysine; alternate1 Publication
    Modified residuei28 – 281N6-methyllysine; alternate2 Publications
    Modified residuei29 – 291Phosphoserine; by AURKB, AURKC and RPS6KA56 Publications
    Modified residuei32 – 321PhosphoserineBy similarity
    Modified residuei37 – 371N6,N6,N6-trimethyllysine; alternateBy similarity
    Modified residuei37 – 371N6,N6-dimethyllysine; alternate2 Publications
    Modified residuei37 – 371N6-acetyllysine; alternate1 Publication
    Modified residuei37 – 371N6-methyllysine; alternate2 Publications
    Modified residuei38 – 381N6-methyllysineBy similarity
    Modified residuei42 – 421PhosphotyrosineBy similarity
    Modified residuei57 – 571N6,N6,N6-trimethyllysine; alternateBy similarity
    Modified residuei57 – 571N6-acetyllysine; alternateBy similarity
    Modified residuei57 – 571N6-crotonyllysine; alternate1 Publication
    Modified residuei57 – 571N6-methyllysine; by EHMT2; alternateBy similarity
    Modified residuei58 – 581PhosphoserineBy similarity
    Modified residuei65 – 651N6-methyllysineBy similarity
    Modified residuei80 – 801N6,N6,N6-trimethyllysine; alternate2 Publications
    Modified residuei80 – 801N6,N6-dimethyllysine; alternate2 Publications
    Modified residuei80 – 801N6-acetyllysine; alternateBy similarity
    Modified residuei80 – 801N6-methyllysine; alternate2 Publications
    Modified residuei81 – 811PhosphothreonineBy similarity
    Modified residuei108 – 1081PhosphothreonineBy similarity
    Modified residuei116 – 1161N6-acetyllysineBy similarity
    Modified residuei123 – 1231N6-acetyllysine; alternateBy similarity
    Modified residuei123 – 1231N6-methyllysine; alternate1 Publication

    Post-translational modificationi

    Acetylation is generally linked to gene activation. Acetylation on Lys-10 (H3K9ac) impairs methylation at Arg-9 (H3R8me2s). Acetylation on Lys-19 (H3K18ac) and Lys-24 (H3K24ac) favors methylation at Arg-18 (H3R17me). Acetylation at Lys-123 (H3K122ac) by EP300/p300 plays a central role in chromatin structure: localizes at the surface of the histone octamer and stimulates transcription, possibly by promoting nucleosome instability.6 Publications
    Citrullination at Arg-9 (H3R8ci) and/or Arg-18 (H3R17ci) by PADI4 impairs methylation and represses transcription.5 Publications
    Asymmetric dimethylation at Arg-18 (H3R17me2a) by CARM1 is linked to gene activation. Symmetric dimethylation at Arg-9 (H3R8me2s) by PRMT5 is linked to gene repression. Asymmetric dimethylation at Arg-3 (H3R2me2a) by PRMT6 is linked to gene repression and is mutually exclusive with H3 Lys-5 methylation (H3K4me2 and H3K4me3). H3R2me2a is present at the 3' of genes regardless of their transcription state and is enriched on inactive promoters, while it is absent on active promoters By similarity.By similarity
    Specifically enriched in modifications associated with active chromatin such as methylation at Lys-5 (H3K4me), Lys-37 and Lys-80. Methylation at Lys-5 (H3K4me) facilitates subsequent acetylation of H3 and H4. Methylation at Lys-80 (H3K79me) is associated with DNA double-strand break (DSB) responses and is a specific target for TP53BP1. Methylation at Lys-10 (H3K9me) and Lys-28 (H3K27me), which are linked to gene repression, are underrepresented. Methylation at Lys-10 (H3K9me) is a specific target for HP1 proteins (CBX1, CBX3 and CBX5) and prevents subsequent phosphorylation at Ser-11 (H3S10ph) and acetylation of H3 and H4. Methylation at Lys-5 (H3K4me) and Lys-80 (H3K79me) require preliminary monoubiquitination of H2B at 'Lys-120'. Methylation at Lys-10 (H3K9me) and Lys-28 (H3K27me) are enriched in inactive X chromosome chromatin. Monomethylation at Lys-57 (H3K56me1) by EHMT2/G9A in G1 phase promotes interaction with PCNA and is required for DNA replication.9 Publications
    Phosphorylated at Thr-4 (H3T3ph) by GSG2/haspin during prophase and dephosphorylated during anaphase. Phosphorylation at Ser-11 (H3S10ph) by AURKB is crucial for chromosome condensation and cell-cycle progression during mitosis and meiosis. In addition phosphorylation at Ser-11 (H3S10ph) by RPS6KA4 and RPS6KA5 is important during interphase because it enables the transcription of genes following external stimulation, like mitogens, stress, growth factors or UV irradiation and result in the activation of genes, such as c-fos and c-jun. Phosphorylation at Ser-11 (H3S10ph), which is linked to gene activation, prevents methylation at Lys-10 (H3K9me) but facilitates acetylation of H3 and H4. Phosphorylation at Ser-11 (H3S10ph) by AURKB mediates the dissociation of HP1 proteins (CBX1, CBX3 and CBX5) from heterochromatin. Phosphorylation at Ser-11 (H3S10ph) is also an essential regulatory mechanism for neoplastic cell transformation. Phosphorylated at Ser-29 (H3S28ph) by MLTK isoform 1, RPS6KA5 or AURKB during mitosis or upon ultraviolet B irradiation. Phosphorylation at Thr-7 (H3T6ph) by PRKCB is a specific tag for epigenetic transcriptional activation that prevents demethylation of Lys-5 (H3K4me) by LSD1/KDM1A. At centromeres, specifically phosphorylated at Thr-12 (H3T11ph) from prophase to early anaphase, by DAPK3 and PKN1. Phosphorylation at Thr-12 (H3T11ph) by PKN1 is a specific tag for epigenetic transcriptional activation that promotes demethylation of Lys-10 (H3K9me) by KDM4C/JMJD2C. Phosphorylation at Tyr-42 (H3Y41ph) by JAK2 promotes exclusion of CBX5 (HP1 alpha) from chromatin. Phosphorylation on Ser-32 (H3S31ph) is specific to regions bordering centromeres in metaphase chromosomes. metaphase chromosomes.10 Publications
    Ubiquitinated. Monoubiquitinated by RAG1 in lymphoid cells, monoubiquitination is required for V(D)J recombination By similarity.By similarity
    Lysine deamination at Lys-5 (H3K4all) to form allysine is mediated by LOXL2. Allysine formation by LOXL2 only takes place on H3K4me3 and results in gene repression By similarity.By similarity
    Crotonylation (Kcr) is specifically present in male germ cells and marks testis-specific genes in post-meiotic cells, including X-linked genes that escape sex chromosome inactivation in haploid cells. Crotonylation marks active promoters and enhancers and confers resistance to transcriptional repressors. It is also associated with post-meiotically activated genes on autosomes.1 Publication

    Keywords - PTMi

    Acetylation, Citrullination, Methylation, Phosphoprotein, Ubl conjugation

    Proteomic databases

    MaxQBiP84244.
    PaxDbiP84244.
    PRIDEiP84244.

    Expressioni

    Developmental stagei

    Expressed throughout the cell cycle independently of DNA synthesis.1 Publication

    Gene expression databases

    BgeeiP84244.
    CleanExiMM_H3F3A.
    MM_H3F3B.
    GenevestigatoriP84244.

    Interactioni

    Subunit structurei

    The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA. Interacts with HIRA, a chaperone required for its incorporation into nucleosomes. Interacts with ZMYND11; when trimethylated at 'Lys-36' (H3.3K36me3).

    Protein-protein interaction databases

    BioGridi200196. 18 interactions.
    200199. 2 interactions.
    IntActiP84244. 39 interactions.
    MINTiMINT-4097105.

    Structurei

    3D structure databases

    ProteinModelPortaliP84244.
    SMRiP84244. Positions 17-136.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domaini

    Specific interaction of trimethylated form at 'Lys-36' (H3.3K36me3) with ZMYND11 is mediated by the encapsulation of Ser-32 residue with a composite pocket formed by the tandem bromo-PWWP domains By similarity. Interacts with ZMYND11; when trimethylated at 'Lys-36' (H3.3K36me3).By similarity

    Sequence similaritiesi

    Belongs to the histone H3 family.Curated

    Phylogenomic databases

    eggNOGiCOG2036.
    GeneTreeiENSGT00750000117538.
    HOVERGENiHBG001172.
    InParanoidiP84244.
    KOiK11253.
    OMAiHIVMART.
    OrthoDBiEOG7HB5C2.
    PhylomeDBiP84244.
    TreeFamiTF314241.

    Family and domain databases

    Gene3Di1.10.20.10. 1 hit.
    InterProiIPR009072. Histone-fold.
    IPR007125. Histone_core_D.
    IPR000164. Histone_H3.
    [Graphical view]
    PANTHERiPTHR11426. PTHR11426. 1 hit.
    PfamiPF00125. Histone. 1 hit.
    [Graphical view]
    PRINTSiPR00622. HISTONEH3.
    SMARTiSM00428. H3. 1 hit.
    [Graphical view]
    SUPFAMiSSF47113. SSF47113. 1 hit.
    PROSITEiPS00322. HISTONE_H3_1. 1 hit.
    PS00959. HISTONE_H3_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P84244-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARTKQTARK STGGKAPRKQ LATKAARKSA PSTGGVKKPH RYRPGTVALR    50
    EIRRYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSAAI GALQEASEAY 100
    LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA 136
    Length:136
    Mass (Da):15,328
    Last modified:January 23, 2007 - v2
    Checksum:i5158ED279E6F9E1C
    GO

    Sequence cautioni

    The sequence AAH92300.1 differs from that shown. Reason: Frameshift at position 127.
    The sequence BAB27616.1 differs from that shown. Reason: Frameshift at position 99.
    The sequence BAE35387.1 differs from that shown. Reason: Frameshift at several positions.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti75 – 751I → T in AAH21768. (PubMed:15489334)Curated
    Sequence conflicti99 – 991A → E in BAE31789. (PubMed:16141072)Curated
    Sequence conflicti99 – 991A → E in BAE30411. (PubMed:16141072)Curated
    Sequence conflicti129 – 1291R → C in X91866. (PubMed:9174168)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X13605 mRNA. Translation: CAA31940.1.
    Z85979 mRNA. Translation: CAB06625.1.
    X91866 mRNA. No translation available.
    AK002928 mRNA. Translation: BAB22464.1.
    AK011431 mRNA. Translation: BAB27616.1. Frameshift.
    AK037900 mRNA. Translation: BAC29895.1.
    AK088075 mRNA. Translation: BAC40130.1.
    AK135839 mRNA. Translation: BAE22687.1.
    AK150467 mRNA. Translation: BAE29584.1.
    AK150468 mRNA. Translation: BAE29585.1.
    AK150591 mRNA. Translation: BAE29685.1.
    AK150928 mRNA. Translation: BAE29966.1.
    AK151274 mRNA. Translation: BAE30261.1.
    AK151336 mRNA. Translation: BAE30314.1.
    AK151451 mRNA. Translation: BAE30411.1.
    AK151634 mRNA. Translation: BAE30566.1.
    AK151658 mRNA. Translation: BAE30586.1.
    AK151661 mRNA. Translation: BAE30589.1.
    AK151869 mRNA. Translation: BAE30757.1.
    AK152293 mRNA. Translation: BAE31102.1.
    AK152453 mRNA. Translation: BAE31231.1.
    AK152455 mRNA. Translation: BAE31233.1.
    AK152623 mRNA. Translation: BAE31366.1.
    AK152911 mRNA. Translation: BAE31590.1.
    AK153034 mRNA. Translation: BAE31666.1.
    AK153189 mRNA. Translation: BAE31789.1.
    AK153239 mRNA. Translation: BAE31831.1.
    AK153294 mRNA. Translation: BAE31877.1.
    AK153371 mRNA. Translation: BAE31939.1.
    AK153530 mRNA. Translation: BAE32069.1.
    AK159615 mRNA. Translation: BAE35232.1.
    AK159807 mRNA. Translation: BAE35387.1. Frameshift.
    AK159850 mRNA. Translation: BAE35427.1.
    AK160677 mRNA. Translation: BAE35953.1.
    AK161675 mRNA. Translation: BAE36524.1.
    AK162040 mRNA. Translation: BAE36694.1.
    AK163244 mRNA. Translation: BAE37253.1.
    AK167828 mRNA. Translation: BAE39850.1.
    AK167879 mRNA. Translation: BAE39892.1.
    AK168197 mRNA. Translation: BAE40157.1.
    AK168698 mRNA. Translation: BAE40542.1.
    AK169042 mRNA. Translation: BAE40831.1.
    AK169226 mRNA. Translation: BAE40995.1.
    BC002268 mRNA. Translation: AAH02268.1.
    BC012687 mRNA. Translation: AAH12687.1.
    BC021768 mRNA. Translation: AAH21768.1.
    BC037730 mRNA. Translation: AAH37730.1.
    BC083353 mRNA. Translation: AAH83353.1.
    BC088835 mRNA. Translation: AAH88835.1.
    BC092043 mRNA. Translation: AAH92043.1.
    BC092300 mRNA. Translation: AAH92300.1. Frameshift.
    BC106177 mRNA. Translation: AAI06178.1.
    AY383567 Genomic DNA. Translation: AAQ96274.1.
    CCDSiCCDS15573.1.
    CCDS36377.1.
    PIRiS04186.
    RefSeqiNP_032236.1. NM_008210.4.
    NP_032237.1. NM_008211.3.
    XP_006532311.1. XM_006532248.1.
    UniGeneiMm.138832.
    Mm.18516.
    Mm.315189.
    Mm.316825.
    Mm.322735.
    Mm.371563.
    Mm.389332.
    Mm.442502.
    Mm.471842.

    Genome annotation databases

    EnsembliENSMUST00000016703; ENSMUSP00000016703; ENSMUSG00000016559.
    ENSMUST00000106454; ENSMUSP00000102062; ENSMUSG00000016559.
    ENSMUST00000161308; ENSMUSP00000124509; ENSMUSG00000060743.
    ENSMUST00000162814; ENSMUSP00000125104; ENSMUSG00000060743.
    GeneIDi15078.
    15081.
    KEGGimmu:15078.
    mmu:15081.
    UCSCiuc007dwr.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X13605 mRNA. Translation: CAA31940.1 .
    Z85979 mRNA. Translation: CAB06625.1 .
    X91866 mRNA. No translation available.
    AK002928 mRNA. Translation: BAB22464.1 .
    AK011431 mRNA. Translation: BAB27616.1 . Frameshift.
    AK037900 mRNA. Translation: BAC29895.1 .
    AK088075 mRNA. Translation: BAC40130.1 .
    AK135839 mRNA. Translation: BAE22687.1 .
    AK150467 mRNA. Translation: BAE29584.1 .
    AK150468 mRNA. Translation: BAE29585.1 .
    AK150591 mRNA. Translation: BAE29685.1 .
    AK150928 mRNA. Translation: BAE29966.1 .
    AK151274 mRNA. Translation: BAE30261.1 .
    AK151336 mRNA. Translation: BAE30314.1 .
    AK151451 mRNA. Translation: BAE30411.1 .
    AK151634 mRNA. Translation: BAE30566.1 .
    AK151658 mRNA. Translation: BAE30586.1 .
    AK151661 mRNA. Translation: BAE30589.1 .
    AK151869 mRNA. Translation: BAE30757.1 .
    AK152293 mRNA. Translation: BAE31102.1 .
    AK152453 mRNA. Translation: BAE31231.1 .
    AK152455 mRNA. Translation: BAE31233.1 .
    AK152623 mRNA. Translation: BAE31366.1 .
    AK152911 mRNA. Translation: BAE31590.1 .
    AK153034 mRNA. Translation: BAE31666.1 .
    AK153189 mRNA. Translation: BAE31789.1 .
    AK153239 mRNA. Translation: BAE31831.1 .
    AK153294 mRNA. Translation: BAE31877.1 .
    AK153371 mRNA. Translation: BAE31939.1 .
    AK153530 mRNA. Translation: BAE32069.1 .
    AK159615 mRNA. Translation: BAE35232.1 .
    AK159807 mRNA. Translation: BAE35387.1 . Frameshift.
    AK159850 mRNA. Translation: BAE35427.1 .
    AK160677 mRNA. Translation: BAE35953.1 .
    AK161675 mRNA. Translation: BAE36524.1 .
    AK162040 mRNA. Translation: BAE36694.1 .
    AK163244 mRNA. Translation: BAE37253.1 .
    AK167828 mRNA. Translation: BAE39850.1 .
    AK167879 mRNA. Translation: BAE39892.1 .
    AK168197 mRNA. Translation: BAE40157.1 .
    AK168698 mRNA. Translation: BAE40542.1 .
    AK169042 mRNA. Translation: BAE40831.1 .
    AK169226 mRNA. Translation: BAE40995.1 .
    BC002268 mRNA. Translation: AAH02268.1 .
    BC012687 mRNA. Translation: AAH12687.1 .
    BC021768 mRNA. Translation: AAH21768.1 .
    BC037730 mRNA. Translation: AAH37730.1 .
    BC083353 mRNA. Translation: AAH83353.1 .
    BC088835 mRNA. Translation: AAH88835.1 .
    BC092043 mRNA. Translation: AAH92043.1 .
    BC092300 mRNA. Translation: AAH92300.1 . Frameshift.
    BC106177 mRNA. Translation: AAI06178.1 .
    AY383567 Genomic DNA. Translation: AAQ96274.1 .
    CCDSi CCDS15573.1.
    CCDS36377.1.
    PIRi S04186.
    RefSeqi NP_032236.1. NM_008210.4.
    NP_032237.1. NM_008211.3.
    XP_006532311.1. XM_006532248.1.
    UniGenei Mm.138832.
    Mm.18516.
    Mm.315189.
    Mm.316825.
    Mm.322735.
    Mm.371563.
    Mm.389332.
    Mm.442502.
    Mm.471842.

    3D structure databases

    ProteinModelPortali P84244.
    SMRi P84244. Positions 17-136.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 200196. 18 interactions.
    200199. 2 interactions.
    IntActi P84244. 39 interactions.
    MINTi MINT-4097105.

    Proteomic databases

    MaxQBi P84244.
    PaxDbi P84244.
    PRIDEi P84244.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000016703 ; ENSMUSP00000016703 ; ENSMUSG00000016559 .
    ENSMUST00000106454 ; ENSMUSP00000102062 ; ENSMUSG00000016559 .
    ENSMUST00000161308 ; ENSMUSP00000124509 ; ENSMUSG00000060743 .
    ENSMUST00000162814 ; ENSMUSP00000125104 ; ENSMUSG00000060743 .
    GeneIDi 15078.
    15081.
    KEGGi mmu:15078.
    mmu:15081.
    UCSCi uc007dwr.1. mouse.

    Organism-specific databases

    CTDi 3020.
    3021.
    MGIi MGI:1097686. H3f3a.
    MGI:1101768. H3f3b.

    Phylogenomic databases

    eggNOGi COG2036.
    GeneTreei ENSGT00750000117538.
    HOVERGENi HBG001172.
    InParanoidi P84244.
    KOi K11253.
    OMAi HIVMART.
    OrthoDBi EOG7HB5C2.
    PhylomeDBi P84244.
    TreeFami TF314241.

    Enzyme and pathway databases

    Reactomei REACT_188970. Oxidative Stress Induced Senescence.
    REACT_196580. Condensation of Prophase Chromosomes.
    REACT_198563. Amyloids.
    REACT_198626. Meiotic synapsis.
    REACT_198629. Meiotic recombination.
    REACT_198649. Factors involved in megakaryocyte development and platelet production.
    REACT_200667. NoRC negatively regulates rRNA expression.
    REACT_206033. Senescence-Associated Secretory Phenotype (SASP).
    REACT_214440. NoRC negatively regulates rRNA expression.
    REACT_216539. formation of the beta-catenin:TCF transactivating complex.
    REACT_222475. PRC2 methylates histones and DNA.
    REACT_224328. SIRT1 negatively regulates rRNA Expression.
    REACT_226917. HATs acetylate histones.
    REACT_27235. Meiotic Recombination.
    REACT_75800. Meiotic Synapsis.

    Miscellaneous databases

    ChiTaRSi H3F3B. mouse.
    NextBioi 287482.
    PROi P84244.
    SOURCEi Search...

    Gene expression databases

    Bgeei P84244.
    CleanExi MM_H3F3A.
    MM_H3F3B.
    Genevestigatori P84244.

    Family and domain databases

    Gene3Di 1.10.20.10. 1 hit.
    InterProi IPR009072. Histone-fold.
    IPR007125. Histone_core_D.
    IPR000164. Histone_H3.
    [Graphical view ]
    PANTHERi PTHR11426. PTHR11426. 1 hit.
    Pfami PF00125. Histone. 1 hit.
    [Graphical view ]
    PRINTSi PR00622. HISTONEH3.
    SMARTi SM00428. H3. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47113. SSF47113. 1 hit.
    PROSITEi PS00322. HISTONE_H3_1. 1 hit.
    PS00959. HISTONE_H3_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Expression of a mouse replacement histone H3.3 gene with a highly conserved 3' noncoding region during SV40- and polyoma-induced Go to S-phase transition."
      Hraba-Renevey S., Kress M.
      Nucleic Acids Res. 17:2449-2461(1989) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] (H3F3B).
    2. "Differential expression of the murine histone genes H3.3A and H3.3B."
      Bramlage B., Kosciessa U., Doenecke D.
      Differentiation 62:13-20(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] (H3F3A AND H3F3B), DEVELOPMENTAL STAGE.
      Tissue: Spermatid.
    3. "H3.3A variant histone mRNA containing an alpha-globin insertion: modulated expression during mouse gametogenesis correlates with meiotic onset."
      Lopez-Alanon D.M., Lopez-Fernandez L.A., Castaneda V., Krimer D.B., Del Mazo J.
      DNA Cell Biol. 16:639-644(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] (H3F3A).
      Strain: Swiss.
      Tissue: Ovary.
    4. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (H3F3A AND H3F3B).
      Strain: BALB/c, C57BL/6J, DBA/2 and NOD.
      Tissue: Bone marrow, Egg, Head, Kidney, Muellerian duct, Stomach and Thymus.
    5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (H3F3A AND H3F3B).
      Strain: C57BL/6 and FVB/N.
      Tissue: Brain, Colon, Mammary tumor and Retina.
    6. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 16-122.
    7. "Identification of a novel phosphorylation site on histone H3 coupled with mitotic chromosome condensation."
      Goto H., Tomono Y., Ajiro K., Kosako H., Fujita M., Sakurai M., Okawa K., Iwamatsu A., Okigaki T., Takahashi T., Inagaki M.
      J. Biol. Chem. 274:25543-25549(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION AT SER-11 AND SER-29.
    8. "Ultraviolet B-induced phosphorylation of histone H3 at serine 28 is mediated by MSK1."
      Zhong S., Jansen C., She Q.-B., Goto H., Inagaki M., Bode A.M., Ma W.-Y., Dong Z.
      J. Biol. Chem. 276:33213-33219(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION AT SER-29.
    9. "Crosstalk between CARM1 methylation and CBP acetylation on histone H3."
      Daujat S., Bauer U.-M., Shah V., Turner B., Berger S., Kouzarides T.
      Curr. Biol. 12:2090-2097(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: ACETYLATION AT LYS-15; LYS-19 AND LYS-24, METHYLATION AT ARG-18.
    10. "Methylation at arginine 17 of histone H3 is linked to gene activation."
      Bauer U.-M., Daujat S., Nielsen S.J., Nightingale K., Kouzarides T.
      EMBO Rep. 3:39-44(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: METHYLATION AT ARG-18.
    11. "Aurora-B phosphorylates Histone H3 at serine28 with regard to the mitotic chromosome condensation."
      Goto H., Yasui Y., Nigg E.A., Inagaki M.
      Genes Cells 7:11-17(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION AT SER-11 AND SER-29.
    12. "Identification of methylation and acetylation sites on mouse histone H3 using matrix-assisted laser desorption/ionization time-of-flight and nanoelectrospray ionization tandem mass spectrometry."
      Cocklin R.R., Wang M.
      J. Protein Chem. 22:327-334(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: ACETYLATION AT LYS-15; LYS-19 AND LYS-24, METHYLATION AT LYS-10; LYS-28; LYS-37; LYS-80 AND LYS-123, IDENTIFICATION BY MASS SPECTROMETRY.
    13. Cited for: CITRULLINATION AT ARG-3; ARG-9; ARG-18 AND ARG-27.
    14. "Human SWI/SNF-associated PRMT5 methylates histone H3 arginine 8 and negatively regulates expression of ST7 and NM23 tumor suppressor genes."
      Pal S., Vishwanath S.N., Erdjument-Bromage H., Tempst P., Sif S.
      Mol. Cell. Biol. 24:9630-9645(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: METHYLATION AT ARG-9, ACETYLATION AT LYS-10.
    15. "Arginine methyltransferase CARM1 is a promoter-specific regulator of NF-kappaB-dependent gene expression."
      Covic M., Hassa P.O., Saccani S., Buerki C., Meier N.I., Lombardi C., Imhof R., Bedford M.T., Natoli G., Hottiger M.O.
      EMBO J. 24:85-96(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: METHYLATION AT ARG-18.
    16. "The kinase haspin is required for mitotic histone H3 Thr 3 phosphorylation and normal metaphase chromosome alignment."
      Dai J., Sultan S., Taylor S.S., Higgins J.M.G.
      Genes Dev. 19:472-488(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION AT THR-4 AND SER-11.
    17. "Phosphorylation of Ser28 in histone H3 mediated by mixed lineage kinase-like mitogen-activated protein triple kinase alpha."
      Choi H.S., Choi B.Y., Cho Y.-Y., Zhu F., Bode A.M., Dong Z.
      J. Biol. Chem. 280:13545-13553(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION AT SER-29.
    18. "MAP kinase-mediated phosphorylation of distinct pools of histone H3 at S10 or S28 via mitogen- and stress-activated kinase 1/2."
      Dyson M.H., Thomson S., Inagaki M., Goto H., Arthur S.J., Nightingale K., Iborra F.J., Mahadevan L.C.
      J. Cell Sci. 118:2247-2259(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION AT SER-11 AND SER-29.
    19. "Stimulation of the Ras-MAPK pathway leads to independent phosphorylation of histone H3 on serine 10 and 28."
      Dunn K.L., Davie J.R.
      Oncogene 24:3492-3502(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION AT SER-11 AND SER-29.
    20. "Organismal differences in post-translational modifications in histones H3 and H4."
      Garcia B.A., Hake S.B., Diaz R.L., Kauer M., Morris S.A., Recht J., Shabanowitz J., Mishra N., Strahl B.D., Allis C.D., Hunt D.F.
      J. Biol. Chem. 282:7641-7655(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: ACETYLATION AT LYS-5; LYS-10; LYS-15; LYS-19; LYS-24 AND LYS-28, METHYLATION AT LYS-5; LYS-10; LYS-19; LYS-24; LYS-28; LYS-37 AND LYS-80, IDENTIFICATION BY MASS SPECTROMETRY.
    21. "Identification of histone H3 lysine 36 acetylation as a highly conserved histone modification."
      Morris S.A., Rao B., Garcia B.A., Hake S.B., Diaz R.L., Shabanowitz J., Hunt D.F., Allis C.D., Lieb J.D., Strahl B.D.
      J. Biol. Chem. 282:7632-7640(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: ACETYLATION AT LYS-37.
    22. "The RING domain of RAG1 ubiquitylates histone H3: a novel activity in chromatin-mediated regulation of V(D)J joining."
      Grazini U., Zanardi F., Citterio E., Casola S., Goding C.R., McBlane F.
      Mol. Cell 37:282-293(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: UBIQUITINATION.
    23. "Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification."
      Tan M., Luo H., Lee S., Jin F., Yang J.S., Montellier E., Buchou T., Cheng Z., Rousseaux S., Rajagopal N., Lu Z., Ye Z., Zhu Q., Wysocka J., Ye Y., Khochbin S., Ren B., Zhao Y.
      Cell 146:1016-1028(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: CROTONYLATION AT LYS-5; LYS-10; LYS-19; LYS-24; LYS-28 AND LYS-57.

    Entry informationi

    Entry nameiH33_MOUSE
    AccessioniPrimary (citable) accession number: P84244
    Secondary accession number(s): P06351
    , P33155, Q3TW79, Q3U6D6, Q569U8, Q5HZY8, Q6TXQ5, Q8VDJ2, Q9D0H3, Q9V3W4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 1, 1988
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 106 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3