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Protein

26S proteasome non-ATPase regulatory subunit 13

Gene

PSMD13

Organism
Gallus gallus (Chicken)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
26S proteasome non-ATPase regulatory subunit 13
Alternative name(s):
26S proteasome regulatory subunit RPN9
26S proteasome regulatory subunit S11
26S proteasome regulatory subunit p40.5
Gene namesi
Name:PSMD13By similarity
OrganismiGallus gallus (Chicken)
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
Proteomesi
  • UP000000539 Componenti: Unplaced

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Proteasome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 37637626S proteasome non-ATPase regulatory subunit 13CuratedPRO_0000223482Add
BLAST

Proteomic databases

PRIDEiP84169.

Interactioni

Subunit structurei

Component of the PA700 complex.By similarity

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini239 – 33597PCISequence analysisAdd
BLAST

Sequence similaritiesi

Belongs to the proteasome subunit S11 family.Curated
Contains 1 PCI domain.Sequence analysis

Phylogenomic databases

HOVERGENiHBG053740.
InParanoidiP84169.
KOiK03039.
PhylomeDBiP84169.

Family and domain databases

InterProiIPR000717. PCI_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01399. PCI. 1 hit.
[Graphical view]
SMARTiSM00088. PINT. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.

Sequencei

Sequence statusi: Complete.

P84169-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKDVPGFLQQ SQSAGPGQAA VWHRLEELYN KKLWHQLTLQ VLDFVQDPCF
60 70 80 90 100
AQGDGLIKLY ENFISEFEHR VNPLSLVEII LHVVRQMTDP TVALTFLEKT
110 120 130 140 150
REKVKSSDEA VILCKTAIGA LKLNIGDLQV TKETIEEVEE MLNNLPGVTS
160 170 180 190 200
VHSRFYDLSS KYYQTIGNHA SYYKDALRFL GCIDVKDLPV SEQQERAFTL
210 220 230 240 250
GLAGLLGEGV YNFGELLMHP VLESLRSTDR QWLIDTLYAF NSGNVETFQA
260 270 280 290 300
LKSAWGQQPD LAANEALLLQ KIQLLCLMEM TFTRPANHRQ LTFEEIAKSA
310 320 330 340 350
KVTVNEVELL VMKALSVGLV KGSIDEVDKR VHMTWVQPRV LDLQQIKGMK
360 370
DRLEFWCTDV RSMEMLVEHQ AHDILT
Length:376
Mass (Da):42,751
Last modified:February 21, 2006 - v1
Checksum:i9983A04807AD567F
GO

Mass spectrometryi

Molecular mass is 42810±2 Da from positions 1 - 376. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CB017092 mRNA. No translation available.
CN218176 mRNA. No translation available.
BU427099 mRNA. No translation available.
RefSeqiXP_015141752.1. XM_015286266.1.
UniGeneiGga.53678.

Genome annotation databases

GeneIDi422990.
KEGGigga:422990.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CB017092 mRNA. No translation available.
CN218176 mRNA. No translation available.
BU427099 mRNA. No translation available.
RefSeqiXP_015141752.1. XM_015286266.1.
UniGeneiGga.53678.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiP84169.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi422990.
KEGGigga:422990.

Organism-specific databases

CTDi5719.

Phylogenomic databases

HOVERGENiHBG053740.
InParanoidiP84169.
KOiK03039.
PhylomeDBiP84169.

Miscellaneous databases

PROiP84169.

Family and domain databases

InterProiIPR000717. PCI_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01399. PCI. 1 hit.
[Graphical view]
SMARTiSM00088. PINT. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Chicken ESTs from lymphoid tissue."
    Morgan R.W., Burnside J.
    Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-180.
  2. "ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels."
    Savolainen P., Fitzsimmons C., Arvestad L., Andersson L., Lundeberg J.
    Cytogenet. Genome Res. 111:79-87(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 88-336.
    Strain: Red jungle fowl1 Publication.
    Tissue: Brain1 Publication.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 246-376.
    Tissue: Chondrocyte1 Publication.
  4. "Proteomic analysis of the Gallus gallus embryo at stage-29 of development."
    Agudo D., Gomez-Esquer F., Diaz-Gil G., Martinez-Arribas F., Delcan J., Schneider J., Palomar M.A., Linares R.
    Proteomics 5:4946-4957(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION, MASS SPECTROMETRY.
    Tissue: Embryo1 Publication.

Entry informationi

Entry nameiPSD13_CHICK
AccessioniPrimary (citable) accession number: P84169
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 21, 2006
Last sequence update: February 21, 2006
Last modified: June 8, 2016
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.