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Protein

60S ribosomal protein L36a

Gene

Rpl36a

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-MMU-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-MMU-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-MMU-6791226. Major pathway of rRNA processing in the nucleolus.
R-MMU-72689. Formation of a pool of free 40S subunits.
R-MMU-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-MMU-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-MMU-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L36a
Alternative name(s):
60S ribosomal protein L44
Gene namesi
Name:Rpl36a
Synonyms:Rpl44
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componentsi: Chromosome 12, Chromosome X

Organism-specific databases

MGIiMGI:1201789. Rpl36a.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10610660S ribosomal protein L36aPRO_0000149120Add
BLAST

Proteomic databases

EPDiP83882.
PaxDbiP83882.
PRIDEiP83882.
TopDownProteomicsiP83882.

PTM databases

iPTMnetiP83882.
PhosphoSiteiP83882.
SwissPalmiP83882.

Expressioni

Gene expression databases

BgeeiP83882.
ExpressionAtlasiP83882. baseline and differential.
GenevisibleiP83882. MM.

Interactioni

Protein-protein interaction databases

BioGridi202985. 1 interaction.
IntActiP83882. 1 interaction.
MINTiMINT-1857533.
STRINGi10090.ENSMUSP00000108837.

Structurei

3D structure databases

ProteinModelPortaliP83882.
SMRiP83882. Positions 2-96.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L44e family.Curated

Phylogenomic databases

eggNOGiKOG3464. Eukaryota.
COG1631. LUCA.
HOGENOMiHOG000224989.
HOVERGENiHBG056127.
InParanoidiP83882.
KOiK02929.
OMAiQIPLKRC.
OrthoDBiEOG7D59R2.
PhylomeDBiP83882.
TreeFamiTF300213.

Family and domain databases

Gene3Di3.10.450.80. 1 hit.
InterProiIPR000552. Ribosomal_L44e.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR10369. PTHR10369. 1 hit.
PfamiPF00935. Ribosomal_L44. 1 hit.
[Graphical view]
ProDomiPD002841. Ribosomal_L44e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01172. RIBOSOMAL_L44E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P83882-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVNVPKTRRT FCKKCGKHQP HKVTQYKKGK DSLYAQGKRR YDRKQSGYGG
60 70 80 90 100
QTKPIFRKKA KTTKKIVLRL ECVEPNCRSK RMLAIKRCKH FELGGDKKRK

GQVIQF
Length:106
Mass (Da):12,441
Last modified:January 23, 2007 - v2
Checksum:iAE3308265D70BD26
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U58105 Genomic DNA. Translation: AAB47245.1.
AK002540 mRNA. Translation: BAB22175.1.
AK003166 mRNA. Translation: BAB22616.1.
AK010629 mRNA. Translation: BAB27075.1.
AK012502 mRNA. Translation: BAB28285.1.
BC019810 mRNA. Translation: AAH19810.1.
BC027515 mRNA. Translation: AAH27515.1.
BC081439 mRNA. Translation: AAH81439.1.
BC081440 mRNA. Translation: AAH81440.1.
CCDSiCCDS41123.1.
RefSeqiNP_063918.1. NM_019865.5.
NP_079865.1. NM_025589.4.
UniGeneiMm.286408.
Mm.379115.
Mm.491116.

Genome annotation databases

EnsembliENSMUST00000054544; ENSMUSP00000059766; ENSMUSG00000049751.
ENSMUST00000110619; ENSMUSP00000106249; ENSMUSG00000049751.
ENSMUST00000110620; ENSMUSP00000106250; ENSMUSG00000049751.
ENSMUST00000113211; ENSMUSP00000108837; ENSMUSG00000079435.
GeneIDi19982.
66483.
KEGGimmu:19982.
mmu:66483.
UCSCiuc007nrs.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U58105 Genomic DNA. Translation: AAB47245.1.
AK002540 mRNA. Translation: BAB22175.1.
AK003166 mRNA. Translation: BAB22616.1.
AK010629 mRNA. Translation: BAB27075.1.
AK012502 mRNA. Translation: BAB28285.1.
BC019810 mRNA. Translation: AAH19810.1.
BC027515 mRNA. Translation: AAH27515.1.
BC081439 mRNA. Translation: AAH81439.1.
BC081440 mRNA. Translation: AAH81440.1.
CCDSiCCDS41123.1.
RefSeqiNP_063918.1. NM_019865.5.
NP_079865.1. NM_025589.4.
UniGeneiMm.286408.
Mm.379115.
Mm.491116.

3D structure databases

ProteinModelPortaliP83882.
SMRiP83882. Positions 2-96.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi202985. 1 interaction.
IntActiP83882. 1 interaction.
MINTiMINT-1857533.
STRINGi10090.ENSMUSP00000108837.

PTM databases

iPTMnetiP83882.
PhosphoSiteiP83882.
SwissPalmiP83882.

Proteomic databases

EPDiP83882.
PaxDbiP83882.
PRIDEiP83882.
TopDownProteomicsiP83882.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000054544; ENSMUSP00000059766; ENSMUSG00000049751.
ENSMUST00000110619; ENSMUSP00000106249; ENSMUSG00000049751.
ENSMUST00000110620; ENSMUSP00000106250; ENSMUSG00000049751.
ENSMUST00000113211; ENSMUSP00000108837; ENSMUSG00000079435.
GeneIDi19982.
66483.
KEGGimmu:19982.
mmu:66483.
UCSCiuc007nrs.2. mouse.

Organism-specific databases

CTDi6166.
6173.
MGIiMGI:1201789. Rpl36a.

Phylogenomic databases

eggNOGiKOG3464. Eukaryota.
COG1631. LUCA.
HOGENOMiHOG000224989.
HOVERGENiHBG056127.
InParanoidiP83882.
KOiK02929.
OMAiQIPLKRC.
OrthoDBiEOG7D59R2.
PhylomeDBiP83882.
TreeFamiTF300213.

Enzyme and pathway databases

ReactomeiR-MMU-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-MMU-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-MMU-6791226. Major pathway of rRNA processing in the nucleolus.
R-MMU-72689. Formation of a pool of free 40S subunits.
R-MMU-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-MMU-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-MMU-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP83882.
SOURCEiSearch...

Gene expression databases

BgeeiP83882.
ExpressionAtlasiP83882. baseline and differential.
GenevisibleiP83882. MM.

Family and domain databases

Gene3Di3.10.450.80. 1 hit.
InterProiIPR000552. Ribosomal_L44e.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR10369. PTHR10369. 1 hit.
PfamiPF00935. Ribosomal_L44. 1 hit.
[Graphical view]
ProDomiPD002841. Ribosomal_L44e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01172. RIBOSOMAL_L44E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sixty-nine kilobases of contiguous human genomic sequence containing the alpha-galactosidase A and Bruton's tyrosine kinase loci."
    Oeltjen J.C., Liu X., Lu J., Allen R.C., Muzny D.M., Belmont J.W., Gibbs R.A.
    Mamm. Genome 6:334-338(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: C129.
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Kidney.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Brain and Mammary gland.
  4. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Pancreas.

Entry informationi

Entry nameiRL36A_MOUSE
AccessioniPrimary (citable) accession number: P83882
Secondary accession number(s): P09896, P10661
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2004
Last sequence update: January 23, 2007
Last modified: June 8, 2016
This is version 110 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.