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P83787 (P83787_MARHY) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
OrganismMarinobacter hydrocarbonoclasticus (Pseudomonas nautica) PDB 1NML
Taxonomic identifier2743 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeMarinobacter

Protein attributes

Sequence length326 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region43 – 442Citrate 1 binding PDB 1NML PDB 1RZ6
Region93 – 942Citrate 2 binding PDB 1RZ6
Region93 – 942Citrate 3 binding PDB 1NML
Region116 – 1172Citrate 1 binding PDB 1NML PDB 1RZ6
Region246 – 2483Citrate 2 binding PDB 1RZ6
Region246 – 2483Citrate 3 binding PDB 1NML
Region267 – 2693Citrate 6 binding PDB 1NML PDB 1RZ6

Sites

Active site1141Proton donor/acceptor PDB 1NML
Metal binding551Iron (heme 1 axial ligand); via tele nitrogen
Metal binding551Iron (heme 2 axial ligand); via tele nitrogen PDB 1NML PDB 1RZ6
Metal binding711Iron (heme 2 axial ligand); via tele nitrogen PDB 1NML PDB 1RZ6
Metal binding791Calcium
Metal binding2011Iron (heme 3 axial ligand); via tele nitrogen PDB 1NML PDB 1RZ5 PDB 1RZ6
Metal binding2561Calcium; via carbonyl oxygen
Metal binding2581Calcium; via carbonyl oxygen
Metal binding2751Iron (heme 3 axial ligand) PDB 1NML PDB 1RZ5 PDB 1RZ6
Binding site511Heme 1 (covalent)
Binding site511Heme 2 (covalent) PDB 1NML PDB 1RZ6
Binding site541Heme 2 (covalent) PDB 1NML PDB 1RZ6
Binding site791Citrate 2 PDB 1RZ6
Binding site811Citrate 3 PDB 1NML
Binding site1971Heme 3 (covalent) PDB 1NML PDB 1RZ5 PDB 1RZ6
Binding site2001Heme 3 (covalent) PDB 1NML PDB 1RZ5 PDB 1RZ6
Binding site2371Citrate 4 PDB 1NML
Binding site2371Citrate 5 PDB 1RZ6
Binding site2601Citrate 3; via amide nitrogen and carbonyl oxygen PDB 1NML
Binding site2971Citrate 6 PDB 1NML PDB 1RZ6
Site941Important for catalytic activity PDB 1NML

Sequences

Sequence LengthMass (Da)Tools
P83787 [UniParc].

Last modified March 15, 2004. Version 1.
Checksum: FAAABCAC1E4652FF

FASTA32635,355
        10         20         30         40         50         60 
DNLMERANSM FEPIPKYPPV IDGNELTQAK VELGKMEFFE PRLSSSHLIS CNTCHNVGLG 

        70         80         90        100        110        120 
GDDELPTSIG HGWQKGPRNS PTVFNAVFNA AQFWDGRAAD LAEQAKGPVQ AGVEMSSTPD 

       130        140        150        160        170        180 
RVVATLKSMP EYIERFEDAF PGQENPVTFD NMAVAIEAYE ATLITPEAPF DKYLRGDTSA 

       190        200        210        220        230        240 
LNESEKEGLA LFMDRGCTAC HSGVNLGGQN YYPFGLVAKP GAEILPEGDK GRFSVTETAS 

       250        260        270        280        290        300 
DEYVFRASPL RNIELTAPYF HSGAVWSLEE AVAVMGTAQL GTELNNDEVK SIVAFLKTLT 

       310        320 
GNVPEVTYPV LPPSTANTPK PVDMIP 

« Hide

References

[1]"Structural basis for the mechanism of Ca(2+) activation of the di-heme cytochrome c peroxidase from Pseudomonas nautica 617."
Dias J.M., Alves T., Bonifacio C., Pereira A.S., Trincao J., Bourgeois D., Moura I., Romao M.J.
Structure 12:961-973(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) IN COMPLEX WITH CALCIUM; CITRATE AND HEME, ACTIVE SITE.

Cross-references

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1NMLX-ray2.20A1-326[»]
1RZ5X-ray2.40A1-326[»]
1RZ6X-ray2.20A1-326[»]
ProteinModelPortalP83787.
SMRP83787. Positions 1-326.
ModBaseSearch...
MobiDBSearch...

Protein family/group databases

PeroxiBase5023. MaqDiHCcP_617.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D1.10.760.10. 2 hits.
InterProIPR009056. Cyt_c-like_dom.
IPR003088. Cyt_c_dom.
IPR004852. Di-haem_cyt_c_peroxidsae.
IPR026259. MauG/Cytc_peroxidase.
[Graphical view]
PfamPF03150. CCP_MauG. 1 hit.
PF00034. Cytochrom_C. 1 hit.
[Graphical view]
PIRSFPIRSF000294. Cytochrome-c_peroxidase. 1 hit.
SUPFAMSSF46626. SSF46626. 2 hits.
PROSITEPS51007. CYTC. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP83787.

Entry information

Entry nameP83787_MARHY
AccessionPrimary (citable) accession number: P83787
Entry history
Integrated into UniProtKB/TrEMBL: March 15, 2004
Last sequence update: March 15, 2004
Last modified: June 11, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)