Cytochrome c peroxidase - Marinobacter hydrocarbonoclasticus

Preferred order of sections

Names and origin

Protein names	Submitted name: Cytochrome c peroxidase PDB 1NML
Organism	Marinobacter hydrocarbonoclasticus (Pseudomonas nautica) PDB 1NML
Taxonomic identifier	2743 [NCBI]
Taxonomic lineage	cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Marinobacter

Protein attributes

Sequence length	326 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	Calcium PDB 1RZ5 Heme PDB 1NML PDB 1RZ5 PDB 1RZ6 Iron Metal-binding
Technical term	3D-structure PDB 1NML PDB 1RZ5 PDB 1RZ6
Gene Ontology (GO)
Molecular_function	electron carrier activity Inferred from electronic annotation. Source: InterPro heme binding Inferred from electronic annotation. Source: InterPro iron ion binding Inferred from electronic annotation. Source: InterPro oxidoreductase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Active site

114

1

Proton donor/acceptor PDB 1NML

Metal binding

55

1

Iron (heme 1 axial ligand); via tele nitrogen PDB 1RZ5

Metal binding

55

1

Iron (heme 2 axial ligand); via tele nitrogen PDB 1NML PDB 1RZ6

Metal binding

71

1

Iron (heme 2 axial ligand); via tele nitrogen PDB 1NML PDB 1RZ6

Metal binding

79

1

Calcium PDB 1RZ5

Metal binding

201

1

Iron (heme 3 axial ligand); via tele nitrogen PDB 1NML PDB 1RZ5 PDB 1RZ6

Metal binding

256

1

Calcium; via carbonyl oxygen PDB 1RZ5

Metal binding

258

1

Calcium; via carbonyl oxygen PDB 1RZ5

Metal binding

275

1

Iron (heme 3 axial ligand) PDB 1NML PDB 1RZ5 PDB 1RZ6

Binding site

51

1

Heme 1 (covalent) PDB 1RZ5

Binding site

51

1

Heme 2 (covalent) PDB 1NML PDB 1RZ6

Binding site

54

1

Heme 2 (covalent) PDB 1NML PDB 1RZ6

Binding site

197

1

Heme 3 (covalent) PDB 1NML PDB 1RZ5 PDB 1RZ6

Binding site

200

1

Heme 3 (covalent) PDB 1NML PDB 1RZ5 PDB 1RZ6

Site

94

1

Important for catalytic activity PDB 1NML

Sequences

Sequence

Length

Mass (Da)

Tools

P83787 [UniParc].

Last modified March 15, 2004. Version 1.
Checksum: FAAABCAC1E4652FF
Show »

FASTA

326

35,355

        10         20         30         40         50         60 
DNLMERANSM FEPIPKYPPV IDGNELTQAK VELGKMEFFE PRLSSSHLIS CNTCHNVGLG 

        70         80         90        100        110        120 
GDDELPTSIG HGWQKGPRNS PTVFNAVFNA AQFWDGRAAD LAEQAKGPVQ AGVEMSSTPD 

       130        140        150        160        170        180 
RVVATLKSMP EYIERFEDAF PGQENPVTFD NMAVAIEAYE ATLITPEAPF DKYLRGDTSA 

       190        200        210        220        230        240 
LNESEKEGLA LFMDRGCTAC HSGVNLGGQN YYPFGLVAKP GAEILPEGDK GRFSVTETAS 

       250        260        270        280        290        300 
DEYVFRASPL RNIELTAPYF HSGAVWSLEE AVAVMGTAQL GTELNNDEVK SIVAFLKTLT 

       310        320 
GNVPEVTYPV LPPSTANTPK PVDMIP

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References

[1]

"Structural basis for the mechanism of Ca(2+) activation of the di-heme cytochrome c peroxidase from Pseudomonas nautica 617."
Dias J.M., Alves T., Bonifacio C., Pereira A.S., Trincao J., Bourgeois D., Moura I., Romao M.J.
Structure 12:961-973(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) IN COMPLEX WITH CALCIUM AND HEME, ACTIVE SITE.

Cross-references

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1NML	X-ray	2.20	A	1-326	[»]
1RZ5	X-ray	2.40	A	1-326	[»]
1RZ6	X-ray	2.20	A	1-326	[»]

ProteinModelPortal

P83787.

SMR

P83787. Positions 1-326.

ModBase

Search...

Protein family/group databases

PeroxiBase

5023. MaqDiHCcP_617.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Family and domain databases

InterPro

IPR009056. Cyt_c_dom.
IPR003088. Cyt_c_I.
IPR004852. Di-haem_cyt_c_peroxidsae.
IPR026259. MauG/Cytc_peroxidase.
[Graphical view]

Pfam

PF03150. CCP_MauG. 1 hit.
PF00034. Cytochrom_C. 1 hit.
[Graphical view]

PIRSF

PIRSF000294. Cytochrome-c_peroxidase. 1 hit.

SUPFAM

SSF46626. Cytochrome_c. 2 hits.

PROSITE

PS51007. CYTC. 2 hits.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

P83787.

Entry information

Entry name

P83787_MARHY

Accession

Primary (citable) accession number: P83787

Entry history

Integrated into UniProtKB/TrEMBL:	March 15, 2004
Last sequence update:	March 15, 2004
Last modified:	March 6, 2013
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)