P83565 (RM40_RAT) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
39S ribosomal protein L40, mitochondrial
Short name=L40mt
Short name=MRP-L40

Gene names

Name:

Mrpl40

Organism

Rattus norvegicus (Rat) [Reference proteome]

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	206 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level

General annotation (Comments)

Subcellular location

Mitochondrion Ref.2.

Ontologies

Keywords
Cellular component	Mitochondrion
Domain	Transit peptide
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Direct protein sequencing Reference proteome
Gene Ontology (GO)
Cellular_component	mitochondrial ribosome Inferred from direct assay Ref.2. Source: UniProtKB
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Transit peptide	1 – 46	46	Mitochondrion Ref.2
	Chain	47 – 206	160	39S ribosomal protein L40, mitochondrial		PRO_0000087687
Experimental info
	Sequence conflict	56	1	V → Y AA sequence Ref.2

Sequences

	Sequence		Length	Mass (Da)
	P83565 [UniParc]. Last modified January 23, 2007. Version 2. Checksum: 500D285FBB8B1E71	FASTA	206	24,397
	10 20 30 40 50 60 MATAAMLCAA RALRPRSWIP GTCQAQVRHT HQRASLLSFW ELIPMRAEPL RKKKKVDPRK 70 80 90 100 110 120 DQAAKDRLKK RIRKLERASQ ELVPIEDFIT PVRFLDKSRQ RPQEEHSFEE SERRALLLKR 130 140 150 160 170 180 WALYKQQEHE MERDAIRAML EAQQEALEQL KLESTELYAE AIKRDTSLFP FEKEGPHYTP 190 200 PVPNYQAPEG RYNDITKVYT QVEFKR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Testis.
[2]	"Mammalian mitochondrial ribosomal proteins. N-terminal amino acid sequencing, characterization, and identification of corresponding gene sequences." Goldschmidt-Reisin S., Kitakawa M., Herfurth E., Wittmann-Liebold B., Grohmann L., Graack H.-R. J. Biol. Chem. 273:34828-34836(1998) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 47-75.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC097472 mRNA. Translation: AAH97472.1.
IPI	IPI00337269.
RefSeq	NP_001020036.1. NM_001024865.1.
UniGene	Rn.3831.
3D structure databases
ModBase	Search...
Proteomic databases
PRIDE	P83565.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000071159; ENSRNOP00000065376; ENSRNOG00000049686.
GeneID	287962.
KEGG	rno:287962.
Organism-specific databases
CTD	64976.
RGD	1565444. Mrpl40.
Phylogenomic databases
GeneTree	ENSGT00390000010239.
HOVERGEN	HBG044505.
Gene expression databases
Genevestigator	P83565.
GermOnline	ENSRNOG00000001896. Rattus norvegicus.
Family and domain databases
InterPro	IPR019192. Ribosomal_L28/L40_mit. [Graphical view]
Pfam	PF09812. MRP-L28. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	627307.

Entry information

Entry name

RM40_RAT

Accession

Primary (citable) accession number: P83565
Secondary accession number(s): Q4V8A4

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 19, 2003
Last sequence update:	January 23, 2007
Last modified:	April 3, 2013
This is version 45 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Chordata Protein Annotation Program