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Protein

39S ribosomal protein L40, mitochondrial

Gene

Mrpl40

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. poly(A) RNA binding Source: Ensembl
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_269170. Mitochondrial translation initiation.
REACT_269586. Mitochondrial translation termination.
REACT_270070. Mitochondrial translation elongation.

Names & Taxonomyi

Protein namesi
Recommended name:
39S ribosomal protein L40, mitochondrial
Short name:
L40mt
Short name:
MRP-L40
Gene namesi
Name:Mrpl40
OrganismiRattus norvegicus (Rat)Curated
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 11

Organism-specific databases

RGDi1565444. Mrpl40.

Subcellular locationi

GO - Cellular componenti

  1. mitochondrial ribosome Source: UniProtKB
  2. nucleolus Source: Ensembl
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 4646Mitochondrion1 PublicationAdd
BLAST
Chaini47 – 20616039S ribosomal protein L40, mitochondrialPRO_0000087687Add
BLAST

Proteomic databases

PRIDEiP83565.

Expressioni

Gene expression databases

GenevestigatoriP83565.

Family & Domainsi

Keywords - Domaini

Transit peptide

Phylogenomic databases

GeneTreeiENSGT00390000010239.
HOVERGENiHBG044505.
InParanoidiP83565.
KOiK17421.
OMAiLYKQQEH.
OrthoDBiEOG71VSVJ.
PhylomeDBiP83565.

Family and domain databases

InterProiIPR019192. Ribosomal_L28/L40_mit.
[Graphical view]
PfamiPF09812. MRP-L28. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P83565-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATAAMLCAA RALRPRSWIP GTCQAQVRHT HQRASLLSFW ELIPMRAEPL
60 70 80 90 100
RKKKKVDPRK DQAAKDRLKK RIRKLERASQ ELVPIEDFIT PVRFLDKSRQ
110 120 130 140 150
RPQEEHSFEE SERRALLLKR WALYKQQEHE MERDAIRAML EAQQEALEQL
160 170 180 190 200
KLESTELYAE AIKRDTSLFP FEKEGPHYTP PVPNYQAPEG RYNDITKVYT

QVEFKR
Length:206
Mass (Da):24,397
Last modified:January 23, 2007 - v2
Checksum:i500D285FBB8B1E71
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti56 – 561V → Y AA sequence (PubMed:9857009).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC097472 mRNA. Translation: AAH97472.1.
RefSeqiNP_001020036.1. NM_001024865.1.
UniGeneiRn.3831.

Genome annotation databases

EnsembliENSRNOT00000071159; ENSRNOP00000065376; ENSRNOG00000049686.
GeneIDi287962.
KEGGirno:287962.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC097472 mRNA. Translation: AAH97472.1.
RefSeqiNP_001020036.1. NM_001024865.1.
UniGeneiRn.3831.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiP83565.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000071159; ENSRNOP00000065376; ENSRNOG00000049686.
GeneIDi287962.
KEGGirno:287962.

Organism-specific databases

CTDi64976.
RGDi1565444. Mrpl40.

Phylogenomic databases

GeneTreeiENSGT00390000010239.
HOVERGENiHBG044505.
InParanoidiP83565.
KOiK17421.
OMAiLYKQQEH.
OrthoDBiEOG71VSVJ.
PhylomeDBiP83565.

Enzyme and pathway databases

ReactomeiREACT_269170. Mitochondrial translation initiation.
REACT_269586. Mitochondrial translation termination.
REACT_270070. Mitochondrial translation elongation.

Miscellaneous databases

NextBioi627307.
PROiP83565.

Gene expression databases

GenevestigatoriP83565.

Family and domain databases

InterProiIPR019192. Ribosomal_L28/L40_mit.
[Graphical view]
PfamiPF09812. MRP-L28. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Testis.
  2. "Mammalian mitochondrial ribosomal proteins. N-terminal amino acid sequencing, characterization, and identification of corresponding gene sequences."
    Goldschmidt-Reisin S., Kitakawa M., Herfurth E., Wittmann-Liebold B., Grohmann L., Graack H.-R.
    J. Biol. Chem. 273:34828-34836(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 47-75.

Entry informationi

Entry nameiRM40_RAT
AccessioniPrimary (citable) accession number: P83565
Secondary accession number(s): Q4V8A4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2003
Last sequence update: January 23, 2007
Last modified: January 7, 2015
This is version 55 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.