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P83565 (RM40_RAT) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
39S ribosomal protein L40, mitochondrial

Short name=L40mt
Short name=MRP-L40
Gene names
Name:Mrpl40
OrganismRattus norvegicus (Rat) [Reference proteome]
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length206 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Subcellular location

Mitochondrion Ref.2.

Ontologies

Keywords
   Cellular componentMitochondrion
   DomainTransit peptide
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Cellular_componentmitochondrial ribosome

Inferred from direct assay Ref.2. Source: UniProtKB

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Transit peptide1 – 4646Mitochondrion Ref.2
Chain47 – 20616039S ribosomal protein L40, mitochondrial
PRO_0000087687

Experimental info

Sequence conflict561V → Y AA sequence Ref.2

Sequences

Sequence LengthMass (Da)Tools
P83565 [UniParc].

Last modified January 23, 2007. Version 2.
Checksum: 500D285FBB8B1E71

FASTA20624,397
        10         20         30         40         50         60 
MATAAMLCAA RALRPRSWIP GTCQAQVRHT HQRASLLSFW ELIPMRAEPL RKKKKVDPRK 

        70         80         90        100        110        120 
DQAAKDRLKK RIRKLERASQ ELVPIEDFIT PVRFLDKSRQ RPQEEHSFEE SERRALLLKR 

       130        140        150        160        170        180 
WALYKQQEHE MERDAIRAML EAQQEALEQL KLESTELYAE AIKRDTSLFP FEKEGPHYTP 

       190        200 
PVPNYQAPEG RYNDITKVYT QVEFKR 

« Hide

References

« Hide 'large scale' references
[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Testis.
[2]"Mammalian mitochondrial ribosomal proteins. N-terminal amino acid sequencing, characterization, and identification of corresponding gene sequences."
Goldschmidt-Reisin S., Kitakawa M., Herfurth E., Wittmann-Liebold B., Grohmann L., Graack H.-R.
J. Biol. Chem. 273:34828-34836(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 47-75.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC097472 mRNA. Translation: AAH97472.1.
RefSeqNP_001020036.1. NM_001024865.1.
UniGeneRn.3831.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEP83565.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000071159; ENSRNOP00000065376; ENSRNOG00000049686.
GeneID287962.
KEGGrno:287962.

Organism-specific databases

CTD64976.
RGD1565444. Mrpl40.

Phylogenomic databases

GeneTreeENSGT00390000010239.
HOVERGENHBG044505.
KOK17421.
OMALYKQQEH.
OrthoDBEOG71VSVJ.
PhylomeDBP83565.

Gene expression databases

GenevestigatorP83565.

Family and domain databases

InterProIPR019192. Ribosomal_L28/L40_mit.
[Graphical view]
PfamPF09812. MRP-L28. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio627307.
PROP83565.

Entry information

Entry nameRM40_RAT
AccessionPrimary (citable) accession number: P83565
Secondary accession number(s): Q4V8A4
Entry history
Integrated into UniProtKB/Swiss-Prot: July 19, 2003
Last sequence update: January 23, 2007
Last modified: May 14, 2014
This is version 51 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program