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Protein

Ribosome biogenesis protein Nop10

Gene

nop10

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein

Keywords - Biological processi

Ribosome biogenesis, rRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome biogenesis protein Nop10
Gene namesi
Name:nop10
Ordered Locus Names:MJ0116.1
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
Proteomesi
  • UP000000805 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 6060Ribosome biogenesis protein Nop10PRO_0000149018Add
BLAST

Interactioni

Protein-protein interaction databases

DIPiDIP-60500N.
STRINGi243232.MJ_0116.1.

Structurei

Secondary structure

1
60
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni10 – 123Combined sources
Beta strandi15 – 206Combined sources
Beta strandi22 – 243Combined sources
Helixi43 – 5412Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2APOX-ray1.95B1-60[»]
2AQCNMR-A1-60[»]
ProteinModelPortaliP81303.
SMRiP81303. Positions 1-60.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP81303.

Family & Domainsi

Sequence similaritiesi

Belongs to the NOP10 family.Curated

Phylogenomic databases

eggNOGiarCOG00906. Archaea.
COG2260. LUCA.
InParanoidiP81303.
KOiK11130.
OMAiFRIRKCP.
PhylomeDBiP81303.

Family and domain databases

HAMAPiMF_00803. Nop10. 1 hit.
InterProiIPR007264. H/ACA_rnp_Nop10.
IPR023532. Nop10_arc-typ.
[Graphical view]
PANTHERiPTHR13305. PTHR13305. 1 hit.
PfamiPF04135. Nop10p. 1 hit.
[Graphical view]
SUPFAMiSSF144210. SSF144210. 1 hit.

Sequencei

Sequence statusi: Complete.

P81303-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVEMRMKKCP KCGLYTLKEI CPKCGEKTVI PKPPKFSLED RWGKYRRMLK
60
RALKNKNKAE
Length:60
Mass (Da):7,130
Last modified:July 15, 1998 - v1
Checksum:iF803BDAF7F216DE7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB98109.1.

Genome annotation databases

EnsemblBacteriaiAAB98109; AAB98109; MJ_0116.1.
KEGGimja:MJ_0116.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB98109.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2APOX-ray1.95B1-60[»]
2AQCNMR-A1-60[»]
ProteinModelPortaliP81303.
SMRiP81303. Positions 1-60.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-60500N.
STRINGi243232.MJ_0116.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB98109; AAB98109; MJ_0116.1.
KEGGimja:MJ_0116.1.

Phylogenomic databases

eggNOGiarCOG00906. Archaea.
COG2260. LUCA.
InParanoidiP81303.
KOiK11130.
OMAiFRIRKCP.
PhylomeDBiP81303.

Miscellaneous databases

EvolutionaryTraceiP81303.

Family and domain databases

HAMAPiMF_00803. Nop10. 1 hit.
InterProiIPR007264. H/ACA_rnp_Nop10.
IPR023532. Nop10_arc-typ.
[Graphical view]
PANTHERiPTHR13305. PTHR13305. 1 hit.
PfamiPF04135. Nop10p. 1 hit.
[Graphical view]
SUPFAMiSSF144210. SSF144210. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiNOP10_METJA
AccessioniPrimary (citable) accession number: P81303
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: July 15, 1998
Last modified: February 17, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.