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Protein

30S ribosomal protein S16

Gene

rpsP

Organism
Thermus thermophilus
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds to the lower part of the body of the 30S subunit, where it stabilizes two of its domains.

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S16UniRule annotation
Gene namesi
Name:rpsPUniRule annotation
Synonyms:rps16UniRule annotation
OrganismiThermus thermophilus
Taxonomic identifieri274 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 919130S ribosomal protein S16PRO_0000167270Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.

Structurei

Secondary structure

1
91
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 86Combined sources
Beta strandi11 – 133Combined sources
Beta strandi20 – 256Combined sources
Beta strandi30 – 323Combined sources
Beta strandi36 – 427Combined sources
Beta strandi46 – 494Combined sources
Helixi56 – 649Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1EMWNMR-A1-70[»]
1TWTmodel-S1-91[»]
ProteinModelPortaliP80379.
SMRiP80379. Positions 1-91.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80379.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S16P family.UniRule annotation

Family and domain databases

Gene3Di3.30.1320.10. 1 hit.
HAMAPiMF_00385. Ribosomal_S16.
InterProiIPR000307. Ribosomal_S16.
IPR023803. Ribosomal_S16_dom.
[Graphical view]
PANTHERiPTHR12919. PTHR12919. 1 hit.
PfamiPF00886. Ribosomal_S16. 1 hit.
[Graphical view]
SUPFAMiSSF54565. SSF54565. 1 hit.
TIGRFAMsiTIGR00002. S16. 1 hit.

Sequencei

Sequence statusi: Complete.

P80379-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKIRLARFG SKHNPHYPHY RIVVTDARRK RDGKYIEKIG YYDPRKTTPD
60 70 80 90
WLKVDVERAR YWLSVGAQPT DTARRLLRQA GVFRQEAREG A
Length:91
Mass (Da):10,784
Last modified:April 26, 2005 - v3
Checksum:i66019D66F0DC3FC0
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti18 – 203Missing (PubMed:10997906).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ224859 Genomic DNA. Translation: CAC21226.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ224859 Genomic DNA. Translation: CAC21226.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1EMWNMR-A1-70[»]
1TWTmodel-S1-91[»]
ProteinModelPortaliP80379.
SMRiP80379. Positions 1-91.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiP80379.

Family and domain databases

Gene3Di3.30.1320.10. 1 hit.
HAMAPiMF_00385. Ribosomal_S16.
InterProiIPR000307. Ribosomal_S16.
IPR023803. Ribosomal_S16_dom.
[Graphical view]
PANTHERiPTHR12919. PTHR12919. 1 hit.
PfamiPF00886. Ribosomal_S16. 1 hit.
[Graphical view]
SUPFAMiSSF54565. SSF54565. 1 hit.
TIGRFAMsiTIGR00002. S16. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Ribosomal protein S16 from Thermus thermophilus."
    Rak A., Wolf-Watz M., Kalinin A., Garber M.B.
    Submitted (MAR-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: VK1.
  2. "Another piece of the ribosome: solution structure of S16 and its location in the 30S subunit."
    Allard P., Rak A.V., Wimberly B.T., Clemons W.M. Jr., Kalinin A., Helgstrand M., Garber M.B., Ramakrishnan V., Haerd T.
    Structure 8:875-882(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY NMR.
    Strain: VK1.

Entry informationi

Entry nameiRS16_THETH
AccessioniPrimary (citable) accession number: P80379
Secondary accession number(s): Q9EVT6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: April 26, 2005
Last modified: February 4, 2015
This is version 89 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.