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Protein

30S ribosomal protein S13

Gene

rpsM

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome structure it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the top of the two subunits; these bridges are in contact with the A site and P site tRNAs respectively and are implicated in movement during ribosome translocation. Separately contacts the tRNAs in the A and P sites.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding, tRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S13
Gene namesi
Name:rpsM
Synonyms:rps13
Ordered Locus Names:TTHA1667
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Pathology & Biotechi

Chemistry databases

DrugBankiDB08185. 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001321602 – 12630S ribosomal protein S13Add BLAST125

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome, contacting protein L5 and the 23S rRNA; these bridges are straddled by the 5S rRNA.

Protein-protein interaction databases

STRINGi300852.TTHA1667.

Structurei

Secondary structure

1126
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi5 – 7Combined sources3
Beta strandi12 – 14Combined sources3
Helixi15 – 19Combined sources5
Beta strandi22 – 24Combined sources3
Helixi28 – 33Combined sources6
Turni34 – 38Combined sources5
Beta strandi41 – 44Combined sources4
Helixi45 – 47Combined sources3
Helixi50 – 61Combined sources12
Beta strandi62 – 64Combined sources3
Helixi67 – 83Combined sources17
Helixi87 – 93Combined sources7
Beta strandi98 – 100Combined sources3
Beta strandi104 – 106Combined sources3
Helixi108 – 111Combined sources4
Beta strandi121 – 123Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FJGX-ray3.00M1-126[»]
1HNWX-ray3.40M1-126[»]
1HNXX-ray3.40M1-126[»]
1HNZX-ray3.30M1-126[»]
1HR0X-ray3.20M1-126[»]
1I94X-ray3.20M2-126[»]
1I95X-ray4.50M2-126[»]
1I96X-ray4.20M2-126[»]
1I97X-ray4.50M2-126[»]
1IBKX-ray3.31M1-126[»]
1IBLX-ray3.11M1-126[»]
1IBMX-ray3.31M1-126[»]
1J5EX-ray3.05M1-126[»]
1JGOX-ray5.60P1-126[»]
1JGPX-ray7.00P1-126[»]
1JGQX-ray5.00P1-126[»]
1L1Umodel-M1-126[»]
1MJ1electron microscopy13.00P1-126[»]
1ML5electron microscopy14.00P1-126[»]
1N32X-ray3.00M1-126[»]
1N33X-ray3.35M1-126[»]
1N34X-ray3.80M1-126[»]
1N36X-ray3.65M1-126[»]
1VVJX-ray3.44QM/XM1-126[»]
1VY4X-ray2.60AM/CM1-126[»]
1VY5X-ray2.55AM/CM1-126[»]
1VY6X-ray2.90AM/CM1-126[»]
1VY7X-ray2.80AM/CM1-126[»]
1XMOX-ray3.25M1-126[»]
1XMQX-ray3.00M1-126[»]
1XNQX-ray3.05M1-126[»]
1XNRX-ray3.10M1-126[»]
2E5LX-ray3.30M2-126[»]
2F4VX-ray3.80M1-126[»]
2HHHX-ray3.35M1-126[»]
2UU9X-ray3.10M2-126[»]
2UUAX-ray2.90M2-126[»]
2UUBX-ray2.80M2-126[»]
2UUCX-ray3.10M2-126[»]
2UXBX-ray3.10M2-126[»]
2UXCX-ray2.90M2-126[»]
2UXDX-ray3.20M2-126[»]
2VQEX-ray2.50M1-126[»]
2VQFX-ray2.90M1-126[»]
2ZM6X-ray3.30M2-126[»]
3OTOX-ray3.69M1-126[»]
3T1HX-ray3.11M1-126[»]
3T1YX-ray2.80M1-126[»]
4AQYX-ray3.50M1-126[»]
4B3MX-ray2.90M1-126[»]
4B3RX-ray3.00M1-126[»]
4B3SX-ray3.15M1-126[»]
4B3TX-ray3.00M1-126[»]
4DR1X-ray3.60M1-126[»]
4DR2X-ray3.25M1-126[»]
4DR3X-ray3.35M1-126[»]
4DR4X-ray3.97M1-126[»]
4DR5X-ray3.45M1-126[»]
4DR6X-ray3.30M1-126[»]
4DR7X-ray3.75M1-126[»]
4DUYX-ray3.39M1-126[»]
4DUZX-ray3.65M1-126[»]
4DV0X-ray3.85M1-126[»]
4DV1X-ray3.85M1-126[»]
4DV2X-ray3.65M1-126[»]
4DV3X-ray3.55M1-126[»]
4DV4X-ray3.65M1-126[»]
4DV5X-ray3.68M1-126[»]
4DV6X-ray3.30M1-126[»]
4DV7X-ray3.29M1-126[»]
4GKJX-ray3.30M2-126[»]
4GKKX-ray3.20M2-126[»]
4JI0X-ray3.49M1-126[»]
4JI1X-ray3.14M1-126[»]
4JI2X-ray3.64M1-126[»]
4JI3X-ray3.35M1-126[»]
4JI4X-ray3.69M1-126[»]
4JI5X-ray3.85M1-126[»]
4JI6X-ray3.55M1-126[»]
4JI7X-ray3.50M1-126[»]
4JI8X-ray3.74M1-126[»]
4JV5X-ray3.16M2-121[»]
4JYAX-ray3.10M2-121[»]
4K0KX-ray3.40M2-122[»]
4KHPX-ray3.10M2-121[»]
4L47X-ray3.22QM/XM1-126[»]
4L71X-ray3.90QM/XM1-126[»]
4LELX-ray3.90QM/XM1-126[»]
4LF4X-ray3.34M1-126[»]
4LF5X-ray3.75M1-126[»]
4LF6X-ray3.31M1-126[»]
4LF7X-ray3.15M1-126[»]
4LF8X-ray3.15M1-126[»]
4LF9X-ray3.28M1-126[»]
4LFAX-ray3.65M1-126[»]
4LFBX-ray3.01M1-126[»]
4LFCX-ray3.60M1-126[»]
4LFZX-ray3.92QM/XM1-126[»]
4LNTX-ray2.94QM/XM1-126[»]
4LSKX-ray3.48QM/XM1-126[»]
4LT8X-ray3.14QM/XM1-126[»]
4NXMX-ray3.65M1-126[»]
4NXNX-ray3.54M1-126[»]
4OX9X-ray3.80M1-126[»]
4P6FX-ray3.60QM/XM1-126[»]
4P70X-ray3.68QM/XM1-126[»]
4TUAX-ray3.60QM/XM1-126[»]
4TUBX-ray3.60QM/XM1-126[»]
4TUCX-ray3.60QM/XM1-126[»]
4TUDX-ray3.60QM/XM1-126[»]
4TUEX-ray3.50QM/XM1-126[»]
4V42X-ray5.50AP1-126[»]
4V49X-ray8.70M2-126[»]
4V4AX-ray9.50M2-126[»]
4V4IX-ray3.71n-[»]
4V4PX-ray5.50BP1-126[»]
4V4RX-ray5.90AM1-126[»]
4V4SX-ray6.76AM1-126[»]
4V4TX-ray6.46AM1-126[»]
4V4XX-ray5.00AP1-126[»]
4V4YX-ray5.50AP1-126[»]
4V4ZX-ray4.51AP1-126[»]
4V51X-ray2.80AM/CM2-126[»]
4V5AX-ray3.50AM/CM2-126[»]
4V5CX-ray3.30AM/CM1-126[»]
4V5DX-ray3.50AM/CM1-126[»]
4V5EX-ray3.45AM/CM1-126[»]
4V5FX-ray3.60AM/CM1-126[»]
4V5GX-ray3.60AM/CM1-126[»]
4V5JX-ray3.10AM/CM1-126[»]
4V5KX-ray3.20AM/CM1-126[»]
4V5LX-ray3.10AM1-126[»]
4V5Melectron microscopy7.80AM1-126[»]
4V5Nelectron microscopy7.60AM1-126[»]
4V5PX-ray3.10AM/CM1-126[»]
4V5QX-ray3.10AM/CM1-126[»]
4V5RX-ray3.10AM/CM1-126[»]
4V5SX-ray3.10AM/CM1-126[»]
4V68electron microscopy6.40AM2-126[»]
4V6AX-ray3.10AM/CM1-126[»]
4V6FX-ray3.10BP/CP1-126[»]
4V6GX-ray3.50AP/CP1-126[»]
4V7JX-ray3.30Am/Bm1-126[»]
4V7KX-ray3.60Am/Bm1-126[»]
4V7LX-ray3.00AM/CM1-126[»]
4V7MX-ray3.45AM/CM1-126[»]
4V7WX-ray3.00AM/CM1-126[»]
4V7XX-ray3.00AM/CM1-126[»]
4V7YX-ray3.00AM/CM1-126[»]
4V7ZX-ray3.10AM/CM1-126[»]
4V87X-ray3.10BP/CP1-126[»]
4V8AX-ray3.20CM/DM1-126[»]
4V8BX-ray3.00AP/CP1-126[»]
4V8CX-ray3.30CP/DP1-126[»]
4V8DX-ray3.00AP/CP1-126[»]
4V8EX-ray3.30BP/DP1-126[»]
4V8FX-ray3.30BP/CP1-126[»]
4V8GX-ray3.00AM/CM1-126[»]
4V8HX-ray3.10AM/CM1-126[»]
4V8IX-ray2.70AM/CM1-126[»]
4V8JX-ray3.90AM/CM1-126[»]
4V8NX-ray3.10AM/CM1-126[»]
4V8OX-ray3.80AM1-126[»]
4V8QX-ray3.10BM1-126[»]
4V8UX-ray3.70AM/CM1-126[»]
4V8XX-ray3.35AM/CM1-126[»]
4V90X-ray2.95AM1-126[»]
4V95X-ray3.20AM/CM1-126[»]
4V97X-ray3.52AM/CM1-126[»]
4V9AX-ray3.30AP/CP1-126[»]
4V9BX-ray3.10AP/CP1-126[»]
4V9HX-ray2.86AM2-125[»]
4V9IX-ray3.30AM/CM2-125[»]
4V9RX-ray3.00AM/CM1-126[»]
4V9SX-ray3.10AM/CM1-126[»]
4W2EX-ray2.90m1-126[»]
4W2FX-ray2.40AM/CM1-126[»]
4W2GX-ray2.55AM/CM1-126[»]
4W2HX-ray2.70AM/CM1-126[»]
4W2IX-ray2.70AM/CM1-126[»]
4W4GX-ray3.30QM/XM1-126[»]
4WPOX-ray2.80BM/DM1-126[»]
4WQ1X-ray3.104A/4I1-126[»]
4WQFX-ray2.80BM/DM1-126[»]
4WQRX-ray3.154A/4I1-126[»]
4WQUX-ray2.80BM/DM1-126[»]
4WQYX-ray2.80BM/DM1-126[»]
4WR6X-ray3.054A/4I1-126[»]
4WRAX-ray3.054A/4I1-126[»]
4WROX-ray3.054I1-126[»]
4WSDX-ray2.954A/4I1-126[»]
4WSMX-ray3.304A/4I1-126[»]
4WT1X-ray3.054A/4I1-126[»]
4WT8X-ray3.40AM/BM2-125[»]
4WU1X-ray3.204A/4I1-126[»]
4WZDX-ray3.104A/4I1-126[»]
4WZOX-ray3.304A/4I1-126[»]
4X62X-ray3.45M2-119[»]
4X64X-ray3.35M2-119[»]
4X65X-ray3.35M2-119[»]
4X66X-ray3.45M2-119[»]
4Y4OX-ray2.301m/2m1-126[»]
4Y4PX-ray2.501m/2m1-126[»]
4YHHX-ray3.42M2-120[»]
4YPBX-ray3.40QM/XM1-126[»]
4YY3X-ray3.60M1-126[»]
4YZVX-ray3.10QM/XM1-126[»]
4Z3SX-ray2.651m/2m1-126[»]
4Z8CX-ray2.901m/2m1-126[»]
4ZERX-ray3.101m/2m2-117[»]
4ZSNX-ray3.60QM/XM1-126[»]
5A9Zelectron microscopy4.70BQ2-115[»]
5AA0electron microscopy5.00BQ2-115[»]
5BR8X-ray3.40M1-126[»]
5CZPX-ray3.30QM/XM1-126[»]
5D8BX-ray3.63JC/NA1-126[»]
5DFEX-ray3.10QM/XM1-126[»]
5DOXX-ray3.101m/2m1-126[»]
5DOYX-ray2.601m/2m1-126[»]
5E7KX-ray3.204A/4I1-126[»]
5E81X-ray2.954A/4I1-126[»]
5EL4X-ray3.154A/4I1-126[»]
5EL5X-ray3.154A/4I1-126[»]
5EL6X-ray3.104A/4I1-126[»]
5EL7X-ray3.154A/4I1-126[»]
5F8KX-ray2.801m/2m2-117[»]
5FDUX-ray2.901m/2m2-117[»]
5FDVX-ray2.801m/2m2-117[»]
5HAUX-ray3.001m/2m1-126[»]
5HCPX-ray2.891m/2m1-126[»]
5HCQX-ray2.801m/2m1-126[»]
5HCRX-ray2.801m/2m1-126[»]
5HD1X-ray2.701m/2m1-126[»]
5IB7X-ray2.994A/4I1-126[»]
5IB8X-ray3.134A/4I1-126[»]
5IBBX-ray2.964A/4I1-126[»]
5IMQelectron microscopy3.80Q1-126[»]
5IMRelectron microscopy-Q1-126[»]
5IWAX-ray3.50M2-126[»]
5J30X-ray3.20QM/XM1-126[»]
5J3CX-ray3.04QM/XM1-126[»]
5J4BX-ray2.601m/2m1-126[»]
5J4CX-ray2.801m/2m1-126[»]
5J8BX-ray2.60m1-126[»]
5LMNelectron microscopy3.55M1-126[»]
5LMOelectron microscopy4.30M1-126[»]
5LMPelectron microscopy5.35M1-126[»]
5LMQelectron microscopy4.20M1-126[»]
5LMRelectron microscopy4.45M1-126[»]
5LMSelectron microscopy5.10M1-126[»]
5LMTelectron microscopy4.15M1-126[»]
5LMUelectron microscopy4.00M1-126[»]
5LMVelectron microscopy4.90M1-126[»]
5VP2X-ray2.801m/2m1-126[»]
5W4KX-ray2.701m/2m1-126[»]
ProteinModelPortaliP80377.
SMRiP80377.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80377.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108Z04. Bacteria.
COG0099. LUCA.
HOGENOMiHOG000039879.
KOiK02952.
OMAiRTKNNSR.
PhylomeDBiP80377.

Family and domain databases

Gene3Di4.10.910.10. 2 hits.
HAMAPiMF_01315. Ribosomal_S13_S18. 1 hit.
InterProiView protein in InterPro
IPR027437. 30s_Rbsml_prot_S13_C.
IPR001892. Ribosomal_S13.
IPR010979. Ribosomal_S13-like_H2TH.
IPR019980. Ribosomal_S13_bac-type.
IPR018269. Ribosomal_S13_CS.
PANTHERiPTHR10871:SF1. PTHR10871:SF1. 1 hit.
PfamiView protein in Pfam
PF00416. Ribosomal_S13. 1 hit.
PIRSFiPIRSF002134. Ribosomal_S13. 1 hit.
SUPFAMiSSF46946. SSF46946. 1 hit.
TIGRFAMsiTIGR03631. uS13_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00646. RIBOSOMAL_S13_1. 1 hit.
PS50159. RIBOSOMAL_S13_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P80377-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARIAGVEIP RNKRVDVALT YIYGIGKARA KEALEKTGIN PATRVKDLTE
60 70 80 90 100
AEVVRLREYV ENTWKLEGEL RAEVAANIKR LMDIGCYRGL RHRRGLPVRG
110 120
QRTRTNARTR KGPRKTVAGK KKAPRK
Length:126
Mass (Da):14,305
Last modified:January 23, 2007 - v3
Checksum:iC20831747B312415
GO

Mass spectrometryi

P80377: Molecular mass is 14174 Da from positions 2 - 126. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB024328 Genomic DNA. Translation: BAA75546.1.
AP008226 Genomic DNA. Translation: BAD71490.1.
RefSeqiWP_008633368.1. NC_006461.1.
YP_144933.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71490; BAD71490; BAD71490.
GeneIDi3167962.
KEGGittj:TTHA1667.
PATRICifig|300852.9.peg.1637.

Similar proteinsi

Entry informationi

Entry nameiRS13_THET8
AccessioniPrimary (citable) accession number: P80377
Secondary accession number(s): Q5SHR3, Q9RA65
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 23, 2007
Last modified: October 25, 2017
This is version 155 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families