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P80377

- RS13_THET8

UniProt

P80377 - RS13_THET8

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Protein

30S ribosomal protein S13

Gene

rpsM

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli

Functioni

Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome structure it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the top of the two subunits; these bridges are in contact with the A site and P site tRNAs respectively and are implicated in movement during ribosome translocation. Separately contacts the tRNAs in the A and P sites.

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1706-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S13
Gene namesi
Name:rpsM
Synonyms:rps13
Ordered Locus Names:TTHA1667
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 12612530S ribosomal protein S13PRO_0000132160Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome, contacting protein L5 and the 23S rRNA; these bridges are straddled by the 5S rRNA.

Protein-protein interaction databases

STRINGi300852.TTHA1667.

Structurei

Secondary structure

1
126
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni5 – 73
Beta strandi12 – 143
Helixi15 – 195
Beta strandi22 – 243
Helixi28 – 336
Turni34 – 385
Beta strandi41 – 444
Helixi45 – 473
Helixi50 – 6112
Beta strandi62 – 643
Helixi67 – 8317
Helixi87 – 937
Beta strandi98 – 1003
Beta strandi103 – 1053
Helixi108 – 1114
Beta strandi121 – 1233

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1FJGX-ray3.00M1-126[»]
1GIXX-ray5.50P1-126[»]
1HNWX-ray3.40M1-126[»]
1HNXX-ray3.40M1-126[»]
1HNZX-ray3.30M1-126[»]
1HR0X-ray3.20M1-126[»]
1I94X-ray3.20M2-126[»]
1I95X-ray4.50M2-126[»]
1I96X-ray4.20M2-126[»]
1I97X-ray4.50M2-126[»]
1IBKX-ray3.31M1-126[»]
1IBLX-ray3.11M1-126[»]
1IBMX-ray3.31M1-126[»]
1J5EX-ray3.05M1-126[»]
1JGOX-ray5.60P1-126[»]
1JGPX-ray7.00P1-126[»]
1JGQX-ray5.00P1-126[»]
1L1Umodel-M1-126[»]
1MJ1electron microscopy13.00P1-126[»]
1ML5electron microscopy14.00P1-126[»]
1N32X-ray3.00M1-126[»]
1N33X-ray3.35M1-126[»]
1N34X-ray3.80M1-126[»]
1N36X-ray3.65M1-126[»]
1PNSX-ray8.70M2-126[»]
1PNXX-ray9.50M2-126[»]
1VVLX-ray3.22M1-126[»]
1VVNX-ray3.22M1-126[»]
1VVPX-ray3.90M1-126[»]
1VVRX-ray3.90M1-126[»]
1VVTX-ray3.90M1-126[»]
1VVVX-ray3.90M1-126[»]
1VVXX-ray3.92M1-126[»]
1VVZX-ray3.92M1-126[»]
1VX8X-ray2.94M1-126[»]
1VXIX-ray2.94M1-126[»]
1VXKX-ray3.48M1-126[»]
1VXMX-ray3.48M1-126[»]
1VXPX-ray3.14M1-126[»]
1VXSX-ray3.14M1-126[»]
1VY0X-ray3.68M1-126[»]
1VY2X-ray3.68M1-126[»]
1XMOX-ray3.25M1-126[»]
1XMQX-ray3.00M1-126[»]
1XNQX-ray3.05M1-126[»]
1XNRX-ray3.10M1-126[»]
1YL4X-ray5.50P1-126[»]
2B64X-ray5.90M1-126[»]
2B9MX-ray6.76M1-126[»]
2B9OX-ray6.46M1-126[»]
2E5LX-ray3.30M2-126[»]
2F4VX-ray3.80M1-126[»]
2HGIX-ray5.00P1-126[»]
2HGPX-ray5.50P1-126[»]
2HGRX-ray4.51P1-126[»]
2HHHX-ray3.35M1-126[»]
2J00X-ray2.80M2-126[»]
2J02X-ray2.80M2-126[»]
2OW8X-ray3.71n-[»]
2UU9X-ray3.10M2-126[»]
2UUAX-ray2.90M2-126[»]
2UUBX-ray2.80M2-126[»]
2UUCX-ray3.10M2-126[»]
2UXBX-ray3.10M2-126[»]
2UXCX-ray2.90M2-126[»]
2UXDX-ray3.20M2-126[»]
2V46X-ray3.50M2-126[»]
2V48X-ray3.50M2-126[»]
2VQEX-ray2.50M1-126[»]
2VQFX-ray2.90M1-126[»]
2WDGX-ray3.30M1-126[»]
2WDHX-ray3.30M1-126[»]
2WDKX-ray3.50M1-126[»]
2WDMX-ray3.50M1-126[»]
2WH1X-ray3.45M1-126[»]
2WH3X-ray3.45M1-126[»]
2WRIX-ray3.60M1-126[»]
2WRKX-ray3.60M1-126[»]
2WRNX-ray3.60M1-126[»]
2WRQX-ray3.60M1-126[»]
2X9RX-ray3.10M1-126[»]
2X9TX-ray3.10M1-126[»]
2XFZX-ray3.20M1-126[»]
2XG1X-ray3.20M1-126[»]
2XQDX-ray3.10M1-126[»]
2XSYelectron microscopy7.80M1-126[»]
2XUYelectron microscopy7.60M1-126[»]
2Y0UX-ray3.10M1-126[»]
2Y0WX-ray3.10M1-126[»]
2Y0YX-ray3.10M1-126[»]
2Y10X-ray3.10M1-126[»]
2Y12X-ray3.10M1-126[»]
2Y14X-ray3.10M1-126[»]
2Y16X-ray3.10M1-126[»]
2Y18X-ray3.10M1-126[»]
2ZM6X-ray3.30M2-126[»]
3FICelectron microscopy6.40M2-126[»]
3HUWX-ray3.10M1-126[»]
3HUYX-ray3.10M1-126[»]
3I8GX-ray3.10P1-126[»]
3I8HX-ray3.10P1-126[»]
3I9BX-ray3.50P1-126[»]
3I9DX-ray3.50P1-126[»]
3KIQX-ray3.30m1-126[»]
3KISX-ray3.30m1-126[»]
3KIUX-ray3.60m1-126[»]
3KIXX-ray3.60m1-126[»]
3KNHX-ray3.00M1-126[»]
3KNJX-ray3.15M1-126[»]
3KNLX-ray3.45M1-126[»]
3KNNX-ray3.45M1-126[»]
3OGEX-ray3.00M1-126[»]
3OGYX-ray3.00M1-126[»]
3OHCX-ray3.00M1-126[»]
3OHDX-ray3.00M1-126[»]
3OHYX-ray3.00M1-126[»]
3OI0X-ray3.00M1-126[»]
3OI2X-ray3.10M1-126[»]
3OI4X-ray3.10M1-126[»]
3OTOX-ray3.69M1-126[»]
3T1HX-ray3.11M1-126[»]
3T1YX-ray2.80M1-126[»]
3TVFX-ray3.10P1-126[»]
3TVGX-ray3.10P1-126[»]
3UXSX-ray3.20M1-126[»]
3UXTX-ray3.20M1-126[»]
3UYDX-ray3.00P1-126[»]
3UYFX-ray3.00P1-126[»]
3UZ3X-ray3.30P1-126[»]
3UZ4X-ray3.30P1-126[»]
3UZ6X-ray3.00P1-126[»]
3UZ7X-ray3.00P1-126[»]
3UZGX-ray3.30P1-126[»]
3UZIX-ray3.30P1-126[»]
3UZLX-ray3.30P1-126[»]
3UZMX-ray3.30P1-126[»]
3V22X-ray3.00M1-126[»]
3V24X-ray3.00M1-126[»]
3V26X-ray3.10M1-126[»]
3V28X-ray3.10M1-126[»]
3V2CX-ray2.70M1-126[»]
3V2EX-ray2.70M1-126[»]
3V6UX-ray3.90M1-126[»]
3V6VX-ray3.90M1-126[»]
3ZN7X-ray3.10M1-126[»]
3ZNDX-ray3.10M1-126[»]
3ZVOX-ray3.80M1-126[»]
4ABRX-ray3.10M1-126[»]
4AQYX-ray3.50M1-126[»]
4B3MX-ray2.90M1-126[»]
4B3RX-ray3.00M1-126[»]
4B3SX-ray3.15M1-126[»]
4B3TX-ray3.00M1-126[»]
4B8FX-ray3.70M1-126[»]
4B8HX-ray3.70M1-126[»]
4BYBX-ray3.35M1-126[»]
4BYDX-ray3.35M1-126[»]
4CR1X-ray2.95M1-126[»]
4DH9X-ray3.20M1-126[»]
4DHBX-ray3.20M1-126[»]
4DR1X-ray3.60M1-126[»]
4DR2X-ray3.25M1-126[»]
4DR3X-ray3.35M1-126[»]
4DR4X-ray3.97M1-126[»]
4DR5X-ray3.45M1-126[»]
4DR6X-ray3.30M1-126[»]
4DR7X-ray3.75M1-126[»]
4DUYX-ray3.39M1-126[»]
4DUZX-ray3.65M1-126[»]
4DV0X-ray3.85M1-126[»]
4DV1X-ray3.85M1-126[»]
4DV2X-ray3.65M1-126[»]
4DV3X-ray3.55M1-126[»]
4DV4X-ray3.65M1-126[»]
4DV5X-ray3.68M1-126[»]
4DV6X-ray3.30M1-126[»]
4DV7X-ray3.29M1-126[»]
4EJ9X-ray3.52M1-126[»]
4EJAX-ray3.52M1-126[»]
4G5KX-ray3.30P1-126[»]
4G5MX-ray3.30P1-126[»]
4G5TX-ray3.10P1-126[»]
4G5VX-ray3.10P1-126[»]
4GKJX-ray3.30M2-126[»]
4GKKX-ray3.20M2-126[»]
4JI0X-ray3.49M1-126[»]
4JI1X-ray3.14M1-126[»]
4JI2X-ray3.64M1-126[»]
4JI3X-ray3.35M1-126[»]
4JI4X-ray3.69M1-126[»]
4JI5X-ray3.85M1-126[»]
4JI6X-ray3.55M1-126[»]
4JI7X-ray3.50M1-126[»]
4JI8X-ray3.74M1-126[»]
4JUWX-ray2.86M2-125[»]
4JV5X-ray3.16M2-121[»]
4JYAX-ray3.10M2-121[»]
4K0KX-ray3.40M2-122[»]
4K0LX-ray3.30M2-125[»]
4K0PX-ray3.30M2-125[»]
4KHPX-ray3.10M2-121[»]
4KWZX-ray3.44M1-126[»]
4KX1X-ray3.44M1-126[»]
4LF4X-ray3.34M1-126[»]
4LF5X-ray3.75M1-126[»]
4LF6X-ray3.31M1-126[»]
4LF7X-ray3.15M1-126[»]
4LF8X-ray3.15M1-126[»]
4LF9X-ray3.28M1-126[»]
4LFAX-ray3.65M1-126[»]
4LFBX-ray3.01M1-126[»]
4LFCX-ray3.60M1-126[»]
4NVUX-ray3.00M1-126[»]
4NVWX-ray3.00M1-126[»]
4NVYX-ray3.10M1-126[»]
4NW0X-ray3.10M1-126[»]
4NXMX-ray3.65M1-126[»]
4NXNX-ray3.54M1-126[»]
4OX9X-ray3.80M1-126[»]
4QCMX-ray2.60M1-126[»]
4QCOX-ray2.60M1-126[»]
4QCQX-ray2.55M1-126[»]
4QCSX-ray2.55M1-126[»]
4QCUX-ray2.90M1-126[»]
4QCWX-ray2.90M1-126[»]
4QCYX-ray2.80M1-126[»]
4QD0X-ray2.80M1-126[»]
ProteinModelPortaliP80377.
SMRiP80377. Positions 2-126.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80377.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S13P family.Curated

Phylogenomic databases

eggNOGiCOG0099.
HOGENOMiHOG000039879.
KOiK02952.
OMAiVAKYPVE.
OrthoDBiEOG618R01.
PhylomeDBiP80377.

Family and domain databases

Gene3Di4.10.910.10. 1 hit.
HAMAPiMF_01315. Ribosomal_S13_S18.
InterProiIPR027437. 30s_Rbsml_prot_S13_C.
IPR001892. Ribosomal_S13.
IPR010979. Ribosomal_S13-like_H2TH.
IPR019980. Ribosomal_S13_bac-type.
IPR018269. Ribosomal_S13_CS.
[Graphical view]
PfamiPF00416. Ribosomal_S13. 1 hit.
[Graphical view]
PIRSFiPIRSF002134. Ribosomal_S13. 1 hit.
SUPFAMiSSF46946. SSF46946. 1 hit.
TIGRFAMsiTIGR03631. bact_S13. 1 hit.
PROSITEiPS00646. RIBOSOMAL_S13_1. 1 hit.
PS50159. RIBOSOMAL_S13_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P80377-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MARIAGVEIP RNKRVDVALT YIYGIGKARA KEALEKTGIN PATRVKDLTE
60 70 80 90 100
AEVVRLREYV ENTWKLEGEL RAEVAANIKR LMDIGCYRGL RHRRGLPVRG
110 120
QRTRTNARTR KGPRKTVAGK KKAPRK
Length:126
Mass (Da):14,305
Last modified:January 23, 2007 - v3
Checksum:iC20831747B312415
GO

Mass spectrometryi

Molecular mass is 14174 Da from positions 2 - 126. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB024328 Genomic DNA. Translation: BAA75546.1.
AP008226 Genomic DNA. Translation: BAD71490.1.
RefSeqiYP_144933.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71490; BAD71490; BAD71490.
GeneIDi3167962.
KEGGittj:TTHA1667.
PATRICi23958289. VBITheThe93045_1637.

Cross-referencesi

Web resourcesi

T.thermophilus ribosome structure and function

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB024328 Genomic DNA. Translation: BAA75546.1 .
AP008226 Genomic DNA. Translation: BAD71490.1 .
RefSeqi YP_144933.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1FJG X-ray 3.00 M 1-126 [» ]
1GIX X-ray 5.50 P 1-126 [» ]
1HNW X-ray 3.40 M 1-126 [» ]
1HNX X-ray 3.40 M 1-126 [» ]
1HNZ X-ray 3.30 M 1-126 [» ]
1HR0 X-ray 3.20 M 1-126 [» ]
1I94 X-ray 3.20 M 2-126 [» ]
1I95 X-ray 4.50 M 2-126 [» ]
1I96 X-ray 4.20 M 2-126 [» ]
1I97 X-ray 4.50 M 2-126 [» ]
1IBK X-ray 3.31 M 1-126 [» ]
1IBL X-ray 3.11 M 1-126 [» ]
1IBM X-ray 3.31 M 1-126 [» ]
1J5E X-ray 3.05 M 1-126 [» ]
1JGO X-ray 5.60 P 1-126 [» ]
1JGP X-ray 7.00 P 1-126 [» ]
1JGQ X-ray 5.00 P 1-126 [» ]
1L1U model - M 1-126 [» ]
1MJ1 electron microscopy 13.00 P 1-126 [» ]
1ML5 electron microscopy 14.00 P 1-126 [» ]
1N32 X-ray 3.00 M 1-126 [» ]
1N33 X-ray 3.35 M 1-126 [» ]
1N34 X-ray 3.80 M 1-126 [» ]
1N36 X-ray 3.65 M 1-126 [» ]
1PNS X-ray 8.70 M 2-126 [» ]
1PNX X-ray 9.50 M 2-126 [» ]
1VVL X-ray 3.22 M 1-126 [» ]
1VVN X-ray 3.22 M 1-126 [» ]
1VVP X-ray 3.90 M 1-126 [» ]
1VVR X-ray 3.90 M 1-126 [» ]
1VVT X-ray 3.90 M 1-126 [» ]
1VVV X-ray 3.90 M 1-126 [» ]
1VVX X-ray 3.92 M 1-126 [» ]
1VVZ X-ray 3.92 M 1-126 [» ]
1VX8 X-ray 2.94 M 1-126 [» ]
1VXI X-ray 2.94 M 1-126 [» ]
1VXK X-ray 3.48 M 1-126 [» ]
1VXM X-ray 3.48 M 1-126 [» ]
1VXP X-ray 3.14 M 1-126 [» ]
1VXS X-ray 3.14 M 1-126 [» ]
1VY0 X-ray 3.68 M 1-126 [» ]
1VY2 X-ray 3.68 M 1-126 [» ]
1XMO X-ray 3.25 M 1-126 [» ]
1XMQ X-ray 3.00 M 1-126 [» ]
1XNQ X-ray 3.05 M 1-126 [» ]
1XNR X-ray 3.10 M 1-126 [» ]
1YL4 X-ray 5.50 P 1-126 [» ]
2B64 X-ray 5.90 M 1-126 [» ]
2B9M X-ray 6.76 M 1-126 [» ]
2B9O X-ray 6.46 M 1-126 [» ]
2E5L X-ray 3.30 M 2-126 [» ]
2F4V X-ray 3.80 M 1-126 [» ]
2HGI X-ray 5.00 P 1-126 [» ]
2HGP X-ray 5.50 P 1-126 [» ]
2HGR X-ray 4.51 P 1-126 [» ]
2HHH X-ray 3.35 M 1-126 [» ]
2J00 X-ray 2.80 M 2-126 [» ]
2J02 X-ray 2.80 M 2-126 [» ]
2OW8 X-ray 3.71 n - [» ]
2UU9 X-ray 3.10 M 2-126 [» ]
2UUA X-ray 2.90 M 2-126 [» ]
2UUB X-ray 2.80 M 2-126 [» ]
2UUC X-ray 3.10 M 2-126 [» ]
2UXB X-ray 3.10 M 2-126 [» ]
2UXC X-ray 2.90 M 2-126 [» ]
2UXD X-ray 3.20 M 2-126 [» ]
2V46 X-ray 3.50 M 2-126 [» ]
2V48 X-ray 3.50 M 2-126 [» ]
2VQE X-ray 2.50 M 1-126 [» ]
2VQF X-ray 2.90 M 1-126 [» ]
2WDG X-ray 3.30 M 1-126 [» ]
2WDH X-ray 3.30 M 1-126 [» ]
2WDK X-ray 3.50 M 1-126 [» ]
2WDM X-ray 3.50 M 1-126 [» ]
2WH1 X-ray 3.45 M 1-126 [» ]
2WH3 X-ray 3.45 M 1-126 [» ]
2WRI X-ray 3.60 M 1-126 [» ]
2WRK X-ray 3.60 M 1-126 [» ]
2WRN X-ray 3.60 M 1-126 [» ]
2WRQ X-ray 3.60 M 1-126 [» ]
2X9R X-ray 3.10 M 1-126 [» ]
2X9T X-ray 3.10 M 1-126 [» ]
2XFZ X-ray 3.20 M 1-126 [» ]
2XG1 X-ray 3.20 M 1-126 [» ]
2XQD X-ray 3.10 M 1-126 [» ]
2XSY electron microscopy 7.80 M 1-126 [» ]
2XUY electron microscopy 7.60 M 1-126 [» ]
2Y0U X-ray 3.10 M 1-126 [» ]
2Y0W X-ray 3.10 M 1-126 [» ]
2Y0Y X-ray 3.10 M 1-126 [» ]
2Y10 X-ray 3.10 M 1-126 [» ]
2Y12 X-ray 3.10 M 1-126 [» ]
2Y14 X-ray 3.10 M 1-126 [» ]
2Y16 X-ray 3.10 M 1-126 [» ]
2Y18 X-ray 3.10 M 1-126 [» ]
2ZM6 X-ray 3.30 M 2-126 [» ]
3FIC electron microscopy 6.40 M 2-126 [» ]
3HUW X-ray 3.10 M 1-126 [» ]
3HUY X-ray 3.10 M 1-126 [» ]
3I8G X-ray 3.10 P 1-126 [» ]
3I8H X-ray 3.10 P 1-126 [» ]
3I9B X-ray 3.50 P 1-126 [» ]
3I9D X-ray 3.50 P 1-126 [» ]
3KIQ X-ray 3.30 m 1-126 [» ]
3KIS X-ray 3.30 m 1-126 [» ]
3KIU X-ray 3.60 m 1-126 [» ]
3KIX X-ray 3.60 m 1-126 [» ]
3KNH X-ray 3.00 M 1-126 [» ]
3KNJ X-ray 3.15 M 1-126 [» ]
3KNL X-ray 3.45 M 1-126 [» ]
3KNN X-ray 3.45 M 1-126 [» ]
3OGE X-ray 3.00 M 1-126 [» ]
3OGY X-ray 3.00 M 1-126 [» ]
3OHC X-ray 3.00 M 1-126 [» ]
3OHD X-ray 3.00 M 1-126 [» ]
3OHY X-ray 3.00 M 1-126 [» ]
3OI0 X-ray 3.00 M 1-126 [» ]
3OI2 X-ray 3.10 M 1-126 [» ]
3OI4 X-ray 3.10 M 1-126 [» ]
3OTO X-ray 3.69 M 1-126 [» ]
3T1H X-ray 3.11 M 1-126 [» ]
3T1Y X-ray 2.80 M 1-126 [» ]
3TVF X-ray 3.10 P 1-126 [» ]
3TVG X-ray 3.10 P 1-126 [» ]
3UXS X-ray 3.20 M 1-126 [» ]
3UXT X-ray 3.20 M 1-126 [» ]
3UYD X-ray 3.00 P 1-126 [» ]
3UYF X-ray 3.00 P 1-126 [» ]
3UZ3 X-ray 3.30 P 1-126 [» ]
3UZ4 X-ray 3.30 P 1-126 [» ]
3UZ6 X-ray 3.00 P 1-126 [» ]
3UZ7 X-ray 3.00 P 1-126 [» ]
3UZG X-ray 3.30 P 1-126 [» ]
3UZI X-ray 3.30 P 1-126 [» ]
3UZL X-ray 3.30 P 1-126 [» ]
3UZM X-ray 3.30 P 1-126 [» ]
3V22 X-ray 3.00 M 1-126 [» ]
3V24 X-ray 3.00 M 1-126 [» ]
3V26 X-ray 3.10 M 1-126 [» ]
3V28 X-ray 3.10 M 1-126 [» ]
3V2C X-ray 2.70 M 1-126 [» ]
3V2E X-ray 2.70 M 1-126 [» ]
3V6U X-ray 3.90 M 1-126 [» ]
3V6V X-ray 3.90 M 1-126 [» ]
3ZN7 X-ray 3.10 M 1-126 [» ]
3ZND X-ray 3.10 M 1-126 [» ]
3ZVO X-ray 3.80 M 1-126 [» ]
4ABR X-ray 3.10 M 1-126 [» ]
4AQY X-ray 3.50 M 1-126 [» ]
4B3M X-ray 2.90 M 1-126 [» ]
4B3R X-ray 3.00 M 1-126 [» ]
4B3S X-ray 3.15 M 1-126 [» ]
4B3T X-ray 3.00 M 1-126 [» ]
4B8F X-ray 3.70 M 1-126 [» ]
4B8H X-ray 3.70 M 1-126 [» ]
4BYB X-ray 3.35 M 1-126 [» ]
4BYD X-ray 3.35 M 1-126 [» ]
4CR1 X-ray 2.95 M 1-126 [» ]
4DH9 X-ray 3.20 M 1-126 [» ]
4DHB X-ray 3.20 M 1-126 [» ]
4DR1 X-ray 3.60 M 1-126 [» ]
4DR2 X-ray 3.25 M 1-126 [» ]
4DR3 X-ray 3.35 M 1-126 [» ]
4DR4 X-ray 3.97 M 1-126 [» ]
4DR5 X-ray 3.45 M 1-126 [» ]
4DR6 X-ray 3.30 M 1-126 [» ]
4DR7 X-ray 3.75 M 1-126 [» ]
4DUY X-ray 3.39 M 1-126 [» ]
4DUZ X-ray 3.65 M 1-126 [» ]
4DV0 X-ray 3.85 M 1-126 [» ]
4DV1 X-ray 3.85 M 1-126 [» ]
4DV2 X-ray 3.65 M 1-126 [» ]
4DV3 X-ray 3.55 M 1-126 [» ]
4DV4 X-ray 3.65 M 1-126 [» ]
4DV5 X-ray 3.68 M 1-126 [» ]
4DV6 X-ray 3.30 M 1-126 [» ]
4DV7 X-ray 3.29 M 1-126 [» ]
4EJ9 X-ray 3.52 M 1-126 [» ]
4EJA X-ray 3.52 M 1-126 [» ]
4G5K X-ray 3.30 P 1-126 [» ]
4G5M X-ray 3.30 P 1-126 [» ]
4G5T X-ray 3.10 P 1-126 [» ]
4G5V X-ray 3.10 P 1-126 [» ]
4GKJ X-ray 3.30 M 2-126 [» ]
4GKK X-ray 3.20 M 2-126 [» ]
4JI0 X-ray 3.49 M 1-126 [» ]
4JI1 X-ray 3.14 M 1-126 [» ]
4JI2 X-ray 3.64 M 1-126 [» ]
4JI3 X-ray 3.35 M 1-126 [» ]
4JI4 X-ray 3.69 M 1-126 [» ]
4JI5 X-ray 3.85 M 1-126 [» ]
4JI6 X-ray 3.55 M 1-126 [» ]
4JI7 X-ray 3.50 M 1-126 [» ]
4JI8 X-ray 3.74 M 1-126 [» ]
4JUW X-ray 2.86 M 2-125 [» ]
4JV5 X-ray 3.16 M 2-121 [» ]
4JYA X-ray 3.10 M 2-121 [» ]
4K0K X-ray 3.40 M 2-122 [» ]
4K0L X-ray 3.30 M 2-125 [» ]
4K0P X-ray 3.30 M 2-125 [» ]
4KHP X-ray 3.10 M 2-121 [» ]
4KWZ X-ray 3.44 M 1-126 [» ]
4KX1 X-ray 3.44 M 1-126 [» ]
4LF4 X-ray 3.34 M 1-126 [» ]
4LF5 X-ray 3.75 M 1-126 [» ]
4LF6 X-ray 3.31 M 1-126 [» ]
4LF7 X-ray 3.15 M 1-126 [» ]
4LF8 X-ray 3.15 M 1-126 [» ]
4LF9 X-ray 3.28 M 1-126 [» ]
4LFA X-ray 3.65 M 1-126 [» ]
4LFB X-ray 3.01 M 1-126 [» ]
4LFC X-ray 3.60 M 1-126 [» ]
4NVU X-ray 3.00 M 1-126 [» ]
4NVW X-ray 3.00 M 1-126 [» ]
4NVY X-ray 3.10 M 1-126 [» ]
4NW0 X-ray 3.10 M 1-126 [» ]
4NXM X-ray 3.65 M 1-126 [» ]
4NXN X-ray 3.54 M 1-126 [» ]
4OX9 X-ray 3.80 M 1-126 [» ]
4QCM X-ray 2.60 M 1-126 [» ]
4QCO X-ray 2.60 M 1-126 [» ]
4QCQ X-ray 2.55 M 1-126 [» ]
4QCS X-ray 2.55 M 1-126 [» ]
4QCU X-ray 2.90 M 1-126 [» ]
4QCW X-ray 2.90 M 1-126 [» ]
4QCY X-ray 2.80 M 1-126 [» ]
4QD0 X-ray 2.80 M 1-126 [» ]
ProteinModelPortali P80377.
SMRi P80377. Positions 2-126.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1667.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD71490 ; BAD71490 ; BAD71490 .
GeneIDi 3167962.
KEGGi ttj:TTHA1667.
PATRICi 23958289. VBITheThe93045_1637.

Phylogenomic databases

eggNOGi COG0099.
HOGENOMi HOG000039879.
KOi K02952.
OMAi VAKYPVE.
OrthoDBi EOG618R01.
PhylomeDBi P80377.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1706-MONOMER.

Miscellaneous databases

EvolutionaryTracei P80377.

Family and domain databases

Gene3Di 4.10.910.10. 1 hit.
HAMAPi MF_01315. Ribosomal_S13_S18.
InterProi IPR027437. 30s_Rbsml_prot_S13_C.
IPR001892. Ribosomal_S13.
IPR010979. Ribosomal_S13-like_H2TH.
IPR019980. Ribosomal_S13_bac-type.
IPR018269. Ribosomal_S13_CS.
[Graphical view ]
Pfami PF00416. Ribosomal_S13. 1 hit.
[Graphical view ]
PIRSFi PIRSF002134. Ribosomal_S13. 1 hit.
SUPFAMi SSF46946. SSF46946. 1 hit.
TIGRFAMsi TIGR03631. bact_S13. 1 hit.
PROSITEi PS00646. RIBOSOMAL_S13_1. 1 hit.
PS50159. RIBOSOMAL_S13_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning of the RNA polymerase alpha subunit gene from Thermus thermophilus HB8 and characterization of the protein."
    Wada T., Yamazaki T., Kuramitsu S., Kyogoku Y.
    J. Biochem. 125:143-150(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  3. "Purification and characterization of the 30S ribosomal proteins from the bacterium Thermus thermophilus."
    Tsiboli P., Herfurth E., Choli T.
    Eur. J. Biochem. 226:169-177(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-25.
  4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  5. Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.
  6. "Structure of functionally activated small ribosomal subunit at 3.3 A resolution."
    Schluenzen F., Tocilj A., Zarivach R., Harms J., Gluehmann M., Janell D., Bashan A., Bartels H., Agmon I., Franceschi F., Yonath A.
    Cell 102:615-623(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
  7. "The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit."
    Brodersen D.E., Clemons W.M. Jr., Carter A.P., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
    Cell 103:1143-1154(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
  8. "Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics."
    Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
    Nature 407:340-348(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 30S SUBUNIT.
  9. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
  10. "Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3."
    Pioletti M., Schluenzen F., Harms J., Zarivach R., Gluehmann M., Avila H., Bashan A., Bartels H., Auerbach T., Jacobi C., Hartsch T., Yonath A., Franceschi F.
    EMBO J. 20:1829-1839(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
  11. "Crystal structure of an initiation factor bound to the 30S ribosomal subunit."
    Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Hartsch T., Wimberly B.T., Ramakrishnan V.
    Science 291:498-501(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
  12. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME, INTERSUBUNIT BRIDGE FORMATION.
  13. "Recognition of cognate transfer RNA by the 30S ribosomal subunit."
    Ogle J.M., Brodersen D.E., Clemons W.M. Jr., Tarry M.J., Carter A.P., Ramakrishnan V.
    Science 292:897-902(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.11 ANGSTROMS) OF THE 30S SUBUNIT.
  14. "Crystal structure of the 30S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16S RNA."
    Brodersen D.E., Clemons W.M. Jr., Carter A.P., Wimberly B.T., Ramakrishnan V.
    J. Mol. Biol. 316:725-768(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.

Entry informationi

Entry nameiRS13_THET8
AccessioniPrimary (citable) accession number: P80377
Secondary accession number(s): Q5SHR3, Q9RA65
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 23, 2007
Last modified: October 29, 2014
This is version 125 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3