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P80377

- RS13_THET8

UniProt

P80377 - RS13_THET8

Protein

30S ribosomal protein S13

Gene

rpsM

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome structure it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the top of the two subunits; these bridges are in contact with the A site and P site tRNAs respectively and are implicated in movement during ribosome translocation. Separately contacts the tRNAs in the A and P sites.

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro
    3. tRNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding, tRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-1706-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S13
    Gene namesi
    Name:rpsM
    Synonyms:rps13
    Ordered Locus Names:TTHA1667
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed1 Publication
    Chaini2 – 12612530S ribosomal protein S13PRO_0000132160Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome, contacting protein L5 and the 23S rRNA; these bridges are straddled by the 5S rRNA.

    Protein-protein interaction databases

    STRINGi300852.TTHA1667.

    Structurei

    Secondary structure

    1
    126
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Turni5 – 73
    Beta strandi12 – 143
    Helixi15 – 195
    Beta strandi22 – 243
    Helixi28 – 336
    Turni34 – 385
    Beta strandi41 – 444
    Helixi45 – 473
    Helixi50 – 6112
    Beta strandi62 – 643
    Helixi67 – 8317
    Helixi87 – 937
    Beta strandi98 – 1003
    Beta strandi103 – 1053
    Helixi108 – 1114
    Beta strandi121 – 1233

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1FJGX-ray3.00M1-126[»]
    1GIXX-ray5.50P1-126[»]
    1HNWX-ray3.40M1-126[»]
    1HNXX-ray3.40M1-126[»]
    1HNZX-ray3.30M1-126[»]
    1HR0X-ray3.20M1-126[»]
    1I94X-ray3.20M2-126[»]
    1I95X-ray4.50M2-126[»]
    1I96X-ray4.20M2-126[»]
    1I97X-ray4.50M2-126[»]
    1IBKX-ray3.31M1-126[»]
    1IBLX-ray3.11M1-126[»]
    1IBMX-ray3.31M1-126[»]
    1J5EX-ray3.05M1-126[»]
    1JGOX-ray5.60P1-126[»]
    1JGPX-ray7.00P1-126[»]
    1JGQX-ray5.00P1-126[»]
    1L1Umodel-M1-126[»]
    1MJ1electron microscopy13.00P1-126[»]
    1ML5electron microscopy14.00P1-126[»]
    1N32X-ray3.00M1-126[»]
    1N33X-ray3.35M1-126[»]
    1N34X-ray3.80M1-126[»]
    1N36X-ray3.65M1-126[»]
    1PNSX-ray8.70M2-126[»]
    1PNXX-ray9.50M2-126[»]
    1XMOX-ray3.25M1-126[»]
    1XMQX-ray3.00M1-126[»]
    1XNQX-ray3.05M1-126[»]
    1XNRX-ray3.10M1-126[»]
    1YL4X-ray5.50P1-126[»]
    2B64X-ray5.90M1-126[»]
    2B9MX-ray6.76M1-126[»]
    2B9OX-ray6.46M1-126[»]
    2E5LX-ray3.30M2-126[»]
    2F4VX-ray3.80M1-126[»]
    2HGIX-ray5.00P1-126[»]
    2HGPX-ray5.50P1-126[»]
    2HGRX-ray4.51P1-126[»]
    2HHHX-ray3.35M1-126[»]
    2J00X-ray2.80M2-126[»]
    2J02X-ray2.80M2-126[»]
    2OW8X-ray3.71n-[»]
    2UU9X-ray3.10M2-126[»]
    2UUAX-ray2.90M2-126[»]
    2UUBX-ray2.80M2-126[»]
    2UUCX-ray3.10M2-126[»]
    2UXBX-ray3.10M2-126[»]
    2UXCX-ray2.90M2-126[»]
    2UXDX-ray3.20M2-126[»]
    2V46X-ray3.50M2-126[»]
    2V48X-ray3.50M2-126[»]
    2VQEX-ray2.50M1-126[»]
    2VQFX-ray2.90M1-126[»]
    2WDGX-ray3.30M1-126[»]
    2WDHX-ray3.30M1-126[»]
    2WDKX-ray3.50M1-126[»]
    2WDMX-ray3.50M1-126[»]
    2WH1X-ray3.45M1-126[»]
    2WH3X-ray3.45M1-126[»]
    2WRIX-ray3.60M1-126[»]
    2WRKX-ray3.60M1-126[»]
    2WRNX-ray3.60M1-126[»]
    2WRQX-ray3.60M1-126[»]
    2X9RX-ray3.10M1-126[»]
    2X9TX-ray3.10M1-126[»]
    2XFZX-ray3.20M1-126[»]
    2XG1X-ray3.20M1-126[»]
    2XQDX-ray3.10M1-126[»]
    2XSYelectron microscopy7.80M1-126[»]
    2XUYelectron microscopy7.60M1-126[»]
    2Y0UX-ray3.10M1-126[»]
    2Y0WX-ray3.10M1-126[»]
    2Y0YX-ray3.10M1-126[»]
    2Y10X-ray3.10M1-126[»]
    2Y12X-ray3.10M1-126[»]
    2Y14X-ray3.10M1-126[»]
    2Y16X-ray3.10M1-126[»]
    2Y18X-ray3.10M1-126[»]
    2ZM6X-ray3.30M2-126[»]
    3FICelectron microscopy6.40M2-126[»]
    3HUWX-ray3.10M1-126[»]
    3HUYX-ray3.10M1-126[»]
    3I8GX-ray3.10P1-126[»]
    3I8HX-ray3.10P1-126[»]
    3I9BX-ray3.50P1-126[»]
    3I9DX-ray3.50P1-126[»]
    3KIQX-ray3.30m1-126[»]
    3KISX-ray3.30m1-126[»]
    3KIUX-ray3.60m1-126[»]
    3KIXX-ray3.60m1-126[»]
    3KNHX-ray3.00M1-126[»]
    3KNJX-ray3.15M1-126[»]
    3KNLX-ray3.45M1-126[»]
    3KNNX-ray3.45M1-126[»]
    3OGEX-ray3.00M1-126[»]
    3OGYX-ray3.00M1-126[»]
    3OHCX-ray3.00M1-126[»]
    3OHDX-ray3.00M1-126[»]
    3OHYX-ray3.00M1-126[»]
    3OI0X-ray3.00M1-126[»]
    3OI2X-ray3.10M1-126[»]
    3OI4X-ray3.10M1-126[»]
    3OTOX-ray3.69M1-126[»]
    3T1HX-ray3.11M1-126[»]
    3T1YX-ray2.80M1-126[»]
    3TVFX-ray3.10P1-126[»]
    3TVGX-ray3.10P1-126[»]
    3UXSX-ray3.20M1-126[»]
    3UXTX-ray3.20M1-126[»]
    3UYDX-ray3.00P1-126[»]
    3UYFX-ray3.00P1-126[»]
    3UZ3X-ray3.30P1-126[»]
    3UZ4X-ray3.30P1-126[»]
    3UZ6X-ray3.00P1-126[»]
    3UZ7X-ray3.00P1-126[»]
    3UZGX-ray3.30P1-126[»]
    3UZIX-ray3.30P1-126[»]
    3UZLX-ray3.30P1-126[»]
    3UZMX-ray3.30P1-126[»]
    3V22X-ray3.00M1-126[»]
    3V24X-ray3.00M1-126[»]
    3V26X-ray3.10M1-126[»]
    3V28X-ray3.10M1-126[»]
    3V2CX-ray2.70M1-126[»]
    3V2EX-ray2.70M1-126[»]
    3V6UX-ray3.90M1-126[»]
    3V6VX-ray3.90M1-126[»]
    3ZN7X-ray3.10M1-126[»]
    3ZNDX-ray3.10M1-126[»]
    3ZVOX-ray3.80M1-126[»]
    4ABRX-ray3.10M1-126[»]
    4AQYX-ray3.50M1-126[»]
    4B3MX-ray2.90M1-126[»]
    4B3RX-ray3.00M1-126[»]
    4B3SX-ray3.15M1-126[»]
    4B3TX-ray3.00M1-126[»]
    4B8FX-ray3.70M1-126[»]
    4B8HX-ray3.70M1-126[»]
    4BYBX-ray3.35M1-126[»]
    4BYDX-ray3.35M1-126[»]
    4CR1X-ray2.95M1-126[»]
    4DH9X-ray3.20M1-126[»]
    4DHBX-ray3.20M1-126[»]
    4DR1X-ray3.60M1-126[»]
    4DR2X-ray3.25M1-126[»]
    4DR3X-ray3.35M1-126[»]
    4DR4X-ray3.97M1-126[»]
    4DR5X-ray3.45M1-126[»]
    4DR6X-ray3.30M1-126[»]
    4DR7X-ray3.75M1-126[»]
    4DUYX-ray3.39M1-126[»]
    4DUZX-ray3.65M1-126[»]
    4DV0X-ray3.85M1-126[»]
    4DV1X-ray3.85M1-126[»]
    4DV2X-ray3.65M1-126[»]
    4DV3X-ray3.55M1-126[»]
    4DV4X-ray3.65M1-126[»]
    4DV5X-ray3.68M1-126[»]
    4DV6X-ray3.30M1-126[»]
    4DV7X-ray3.29M1-126[»]
    4EJ9X-ray3.52M1-126[»]
    4EJAX-ray3.52M1-126[»]
    4G5KX-ray3.30P1-126[»]
    4G5MX-ray3.30P1-126[»]
    4G5TX-ray3.10P1-126[»]
    4G5VX-ray3.10P1-126[»]
    4GKJX-ray3.30M2-126[»]
    4GKKX-ray3.20M2-126[»]
    4JI0X-ray3.49M1-126[»]
    4JI1X-ray3.14M1-126[»]
    4JI2X-ray3.64M1-126[»]
    4JI3X-ray3.35M1-126[»]
    4JI4X-ray3.69M1-126[»]
    4JI5X-ray3.85M1-126[»]
    4JI6X-ray3.55M1-126[»]
    4JI7X-ray3.50M1-126[»]
    4JI8X-ray3.74M1-126[»]
    4JUWX-ray2.86M2-125[»]
    4JV5X-ray3.16M2-121[»]
    4JYAX-ray3.10M2-121[»]
    4K0KX-ray3.40M2-122[»]
    4K0LX-ray3.30M2-125[»]
    4K0PX-ray3.30M2-125[»]
    4KHPX-ray3.10M2-121[»]
    4NVUX-ray3.00M1-126[»]
    4NVWX-ray3.00M1-126[»]
    4NVYX-ray3.10M1-126[»]
    4NW0X-ray3.10M1-126[»]
    4NXMX-ray3.65M1-126[»]
    4NXNX-ray3.54M1-126[»]
    4OX9X-ray3.80M1-126[»]
    ProteinModelPortaliP80377.
    SMRiP80377. Positions 2-126.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP80377.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S13P family.Curated

    Phylogenomic databases

    eggNOGiCOG0099.
    HOGENOMiHOG000039879.
    KOiK02952.
    OMAiVAKYPVE.
    OrthoDBiEOG618R01.
    PhylomeDBiP80377.

    Family and domain databases

    Gene3Di4.10.910.10. 1 hit.
    HAMAPiMF_01315. Ribosomal_S13_S18.
    InterProiIPR027437. 30s_Rbsml_prot_S13_C.
    IPR001892. Ribosomal_S13.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR019980. Ribosomal_S13_bac-type.
    IPR018269. Ribosomal_S13_CS.
    [Graphical view]
    PfamiPF00416. Ribosomal_S13. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002134. Ribosomal_S13. 1 hit.
    SUPFAMiSSF46946. SSF46946. 1 hit.
    TIGRFAMsiTIGR03631. bact_S13. 1 hit.
    PROSITEiPS00646. RIBOSOMAL_S13_1. 1 hit.
    PS50159. RIBOSOMAL_S13_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P80377-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARIAGVEIP RNKRVDVALT YIYGIGKARA KEALEKTGIN PATRVKDLTE    50
    AEVVRLREYV ENTWKLEGEL RAEVAANIKR LMDIGCYRGL RHRRGLPVRG 100
    QRTRTNARTR KGPRKTVAGK KKAPRK 126
    Length:126
    Mass (Da):14,305
    Last modified:January 23, 2007 - v3
    Checksum:iC20831747B312415
    GO

    Mass spectrometryi

    Molecular mass is 14174 Da from positions 2 - 126. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB024328 Genomic DNA. Translation: BAA75546.1.
    AP008226 Genomic DNA. Translation: BAD71490.1.
    RefSeqiYP_144933.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD71490; BAD71490; BAD71490.
    GeneIDi3167962.
    KEGGittj:TTHA1667.
    PATRICi23958289. VBITheThe93045_1637.

    Cross-referencesi

    Web resourcesi

    T.thermophilus ribosome structure and function

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB024328 Genomic DNA. Translation: BAA75546.1 .
    AP008226 Genomic DNA. Translation: BAD71490.1 .
    RefSeqi YP_144933.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1FJG X-ray 3.00 M 1-126 [» ]
    1GIX X-ray 5.50 P 1-126 [» ]
    1HNW X-ray 3.40 M 1-126 [» ]
    1HNX X-ray 3.40 M 1-126 [» ]
    1HNZ X-ray 3.30 M 1-126 [» ]
    1HR0 X-ray 3.20 M 1-126 [» ]
    1I94 X-ray 3.20 M 2-126 [» ]
    1I95 X-ray 4.50 M 2-126 [» ]
    1I96 X-ray 4.20 M 2-126 [» ]
    1I97 X-ray 4.50 M 2-126 [» ]
    1IBK X-ray 3.31 M 1-126 [» ]
    1IBL X-ray 3.11 M 1-126 [» ]
    1IBM X-ray 3.31 M 1-126 [» ]
    1J5E X-ray 3.05 M 1-126 [» ]
    1JGO X-ray 5.60 P 1-126 [» ]
    1JGP X-ray 7.00 P 1-126 [» ]
    1JGQ X-ray 5.00 P 1-126 [» ]
    1L1U model - M 1-126 [» ]
    1MJ1 electron microscopy 13.00 P 1-126 [» ]
    1ML5 electron microscopy 14.00 P 1-126 [» ]
    1N32 X-ray 3.00 M 1-126 [» ]
    1N33 X-ray 3.35 M 1-126 [» ]
    1N34 X-ray 3.80 M 1-126 [» ]
    1N36 X-ray 3.65 M 1-126 [» ]
    1PNS X-ray 8.70 M 2-126 [» ]
    1PNX X-ray 9.50 M 2-126 [» ]
    1XMO X-ray 3.25 M 1-126 [» ]
    1XMQ X-ray 3.00 M 1-126 [» ]
    1XNQ X-ray 3.05 M 1-126 [» ]
    1XNR X-ray 3.10 M 1-126 [» ]
    1YL4 X-ray 5.50 P 1-126 [» ]
    2B64 X-ray 5.90 M 1-126 [» ]
    2B9M X-ray 6.76 M 1-126 [» ]
    2B9O X-ray 6.46 M 1-126 [» ]
    2E5L X-ray 3.30 M 2-126 [» ]
    2F4V X-ray 3.80 M 1-126 [» ]
    2HGI X-ray 5.00 P 1-126 [» ]
    2HGP X-ray 5.50 P 1-126 [» ]
    2HGR X-ray 4.51 P 1-126 [» ]
    2HHH X-ray 3.35 M 1-126 [» ]
    2J00 X-ray 2.80 M 2-126 [» ]
    2J02 X-ray 2.80 M 2-126 [» ]
    2OW8 X-ray 3.71 n - [» ]
    2UU9 X-ray 3.10 M 2-126 [» ]
    2UUA X-ray 2.90 M 2-126 [» ]
    2UUB X-ray 2.80 M 2-126 [» ]
    2UUC X-ray 3.10 M 2-126 [» ]
    2UXB X-ray 3.10 M 2-126 [» ]
    2UXC X-ray 2.90 M 2-126 [» ]
    2UXD X-ray 3.20 M 2-126 [» ]
    2V46 X-ray 3.50 M 2-126 [» ]
    2V48 X-ray 3.50 M 2-126 [» ]
    2VQE X-ray 2.50 M 1-126 [» ]
    2VQF X-ray 2.90 M 1-126 [» ]
    2WDG X-ray 3.30 M 1-126 [» ]
    2WDH X-ray 3.30 M 1-126 [» ]
    2WDK X-ray 3.50 M 1-126 [» ]
    2WDM X-ray 3.50 M 1-126 [» ]
    2WH1 X-ray 3.45 M 1-126 [» ]
    2WH3 X-ray 3.45 M 1-126 [» ]
    2WRI X-ray 3.60 M 1-126 [» ]
    2WRK X-ray 3.60 M 1-126 [» ]
    2WRN X-ray 3.60 M 1-126 [» ]
    2WRQ X-ray 3.60 M 1-126 [» ]
    2X9R X-ray 3.10 M 1-126 [» ]
    2X9T X-ray 3.10 M 1-126 [» ]
    2XFZ X-ray 3.20 M 1-126 [» ]
    2XG1 X-ray 3.20 M 1-126 [» ]
    2XQD X-ray 3.10 M 1-126 [» ]
    2XSY electron microscopy 7.80 M 1-126 [» ]
    2XUY electron microscopy 7.60 M 1-126 [» ]
    2Y0U X-ray 3.10 M 1-126 [» ]
    2Y0W X-ray 3.10 M 1-126 [» ]
    2Y0Y X-ray 3.10 M 1-126 [» ]
    2Y10 X-ray 3.10 M 1-126 [» ]
    2Y12 X-ray 3.10 M 1-126 [» ]
    2Y14 X-ray 3.10 M 1-126 [» ]
    2Y16 X-ray 3.10 M 1-126 [» ]
    2Y18 X-ray 3.10 M 1-126 [» ]
    2ZM6 X-ray 3.30 M 2-126 [» ]
    3FIC electron microscopy 6.40 M 2-126 [» ]
    3HUW X-ray 3.10 M 1-126 [» ]
    3HUY X-ray 3.10 M 1-126 [» ]
    3I8G X-ray 3.10 P 1-126 [» ]
    3I8H X-ray 3.10 P 1-126 [» ]
    3I9B X-ray 3.50 P 1-126 [» ]
    3I9D X-ray 3.50 P 1-126 [» ]
    3KIQ X-ray 3.30 m 1-126 [» ]
    3KIS X-ray 3.30 m 1-126 [» ]
    3KIU X-ray 3.60 m 1-126 [» ]
    3KIX X-ray 3.60 m 1-126 [» ]
    3KNH X-ray 3.00 M 1-126 [» ]
    3KNJ X-ray 3.15 M 1-126 [» ]
    3KNL X-ray 3.45 M 1-126 [» ]
    3KNN X-ray 3.45 M 1-126 [» ]
    3OGE X-ray 3.00 M 1-126 [» ]
    3OGY X-ray 3.00 M 1-126 [» ]
    3OHC X-ray 3.00 M 1-126 [» ]
    3OHD X-ray 3.00 M 1-126 [» ]
    3OHY X-ray 3.00 M 1-126 [» ]
    3OI0 X-ray 3.00 M 1-126 [» ]
    3OI2 X-ray 3.10 M 1-126 [» ]
    3OI4 X-ray 3.10 M 1-126 [» ]
    3OTO X-ray 3.69 M 1-126 [» ]
    3T1H X-ray 3.11 M 1-126 [» ]
    3T1Y X-ray 2.80 M 1-126 [» ]
    3TVF X-ray 3.10 P 1-126 [» ]
    3TVG X-ray 3.10 P 1-126 [» ]
    3UXS X-ray 3.20 M 1-126 [» ]
    3UXT X-ray 3.20 M 1-126 [» ]
    3UYD X-ray 3.00 P 1-126 [» ]
    3UYF X-ray 3.00 P 1-126 [» ]
    3UZ3 X-ray 3.30 P 1-126 [» ]
    3UZ4 X-ray 3.30 P 1-126 [» ]
    3UZ6 X-ray 3.00 P 1-126 [» ]
    3UZ7 X-ray 3.00 P 1-126 [» ]
    3UZG X-ray 3.30 P 1-126 [» ]
    3UZI X-ray 3.30 P 1-126 [» ]
    3UZL X-ray 3.30 P 1-126 [» ]
    3UZM X-ray 3.30 P 1-126 [» ]
    3V22 X-ray 3.00 M 1-126 [» ]
    3V24 X-ray 3.00 M 1-126 [» ]
    3V26 X-ray 3.10 M 1-126 [» ]
    3V28 X-ray 3.10 M 1-126 [» ]
    3V2C X-ray 2.70 M 1-126 [» ]
    3V2E X-ray 2.70 M 1-126 [» ]
    3V6U X-ray 3.90 M 1-126 [» ]
    3V6V X-ray 3.90 M 1-126 [» ]
    3ZN7 X-ray 3.10 M 1-126 [» ]
    3ZND X-ray 3.10 M 1-126 [» ]
    3ZVO X-ray 3.80 M 1-126 [» ]
    4ABR X-ray 3.10 M 1-126 [» ]
    4AQY X-ray 3.50 M 1-126 [» ]
    4B3M X-ray 2.90 M 1-126 [» ]
    4B3R X-ray 3.00 M 1-126 [» ]
    4B3S X-ray 3.15 M 1-126 [» ]
    4B3T X-ray 3.00 M 1-126 [» ]
    4B8F X-ray 3.70 M 1-126 [» ]
    4B8H X-ray 3.70 M 1-126 [» ]
    4BYB X-ray 3.35 M 1-126 [» ]
    4BYD X-ray 3.35 M 1-126 [» ]
    4CR1 X-ray 2.95 M 1-126 [» ]
    4DH9 X-ray 3.20 M 1-126 [» ]
    4DHB X-ray 3.20 M 1-126 [» ]
    4DR1 X-ray 3.60 M 1-126 [» ]
    4DR2 X-ray 3.25 M 1-126 [» ]
    4DR3 X-ray 3.35 M 1-126 [» ]
    4DR4 X-ray 3.97 M 1-126 [» ]
    4DR5 X-ray 3.45 M 1-126 [» ]
    4DR6 X-ray 3.30 M 1-126 [» ]
    4DR7 X-ray 3.75 M 1-126 [» ]
    4DUY X-ray 3.39 M 1-126 [» ]
    4DUZ X-ray 3.65 M 1-126 [» ]
    4DV0 X-ray 3.85 M 1-126 [» ]
    4DV1 X-ray 3.85 M 1-126 [» ]
    4DV2 X-ray 3.65 M 1-126 [» ]
    4DV3 X-ray 3.55 M 1-126 [» ]
    4DV4 X-ray 3.65 M 1-126 [» ]
    4DV5 X-ray 3.68 M 1-126 [» ]
    4DV6 X-ray 3.30 M 1-126 [» ]
    4DV7 X-ray 3.29 M 1-126 [» ]
    4EJ9 X-ray 3.52 M 1-126 [» ]
    4EJA X-ray 3.52 M 1-126 [» ]
    4G5K X-ray 3.30 P 1-126 [» ]
    4G5M X-ray 3.30 P 1-126 [» ]
    4G5T X-ray 3.10 P 1-126 [» ]
    4G5V X-ray 3.10 P 1-126 [» ]
    4GKJ X-ray 3.30 M 2-126 [» ]
    4GKK X-ray 3.20 M 2-126 [» ]
    4JI0 X-ray 3.49 M 1-126 [» ]
    4JI1 X-ray 3.14 M 1-126 [» ]
    4JI2 X-ray 3.64 M 1-126 [» ]
    4JI3 X-ray 3.35 M 1-126 [» ]
    4JI4 X-ray 3.69 M 1-126 [» ]
    4JI5 X-ray 3.85 M 1-126 [» ]
    4JI6 X-ray 3.55 M 1-126 [» ]
    4JI7 X-ray 3.50 M 1-126 [» ]
    4JI8 X-ray 3.74 M 1-126 [» ]
    4JUW X-ray 2.86 M 2-125 [» ]
    4JV5 X-ray 3.16 M 2-121 [» ]
    4JYA X-ray 3.10 M 2-121 [» ]
    4K0K X-ray 3.40 M 2-122 [» ]
    4K0L X-ray 3.30 M 2-125 [» ]
    4K0P X-ray 3.30 M 2-125 [» ]
    4KHP X-ray 3.10 M 2-121 [» ]
    4NVU X-ray 3.00 M 1-126 [» ]
    4NVW X-ray 3.00 M 1-126 [» ]
    4NVY X-ray 3.10 M 1-126 [» ]
    4NW0 X-ray 3.10 M 1-126 [» ]
    4NXM X-ray 3.65 M 1-126 [» ]
    4NXN X-ray 3.54 M 1-126 [» ]
    4OX9 X-ray 3.80 M 1-126 [» ]
    ProteinModelPortali P80377.
    SMRi P80377. Positions 2-126.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA1667.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD71490 ; BAD71490 ; BAD71490 .
    GeneIDi 3167962.
    KEGGi ttj:TTHA1667.
    PATRICi 23958289. VBITheThe93045_1637.

    Phylogenomic databases

    eggNOGi COG0099.
    HOGENOMi HOG000039879.
    KOi K02952.
    OMAi VAKYPVE.
    OrthoDBi EOG618R01.
    PhylomeDBi P80377.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-1706-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P80377.

    Family and domain databases

    Gene3Di 4.10.910.10. 1 hit.
    HAMAPi MF_01315. Ribosomal_S13_S18.
    InterProi IPR027437. 30s_Rbsml_prot_S13_C.
    IPR001892. Ribosomal_S13.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR019980. Ribosomal_S13_bac-type.
    IPR018269. Ribosomal_S13_CS.
    [Graphical view ]
    Pfami PF00416. Ribosomal_S13. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002134. Ribosomal_S13. 1 hit.
    SUPFAMi SSF46946. SSF46946. 1 hit.
    TIGRFAMsi TIGR03631. bact_S13. 1 hit.
    PROSITEi PS00646. RIBOSOMAL_S13_1. 1 hit.
    PS50159. RIBOSOMAL_S13_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Cloning of the RNA polymerase alpha subunit gene from Thermus thermophilus HB8 and characterization of the protein."
      Wada T., Yamazaki T., Kuramitsu S., Kyogoku Y.
      J. Biochem. 125:143-150(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    3. "Purification and characterization of the 30S ribosomal proteins from the bacterium Thermus thermophilus."
      Tsiboli P., Herfurth E., Choli T.
      Eur. J. Biochem. 226:169-177(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-25.
    4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.
    5. Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.
    6. "Structure of functionally activated small ribosomal subunit at 3.3 A resolution."
      Schluenzen F., Tocilj A., Zarivach R., Harms J., Gluehmann M., Janell D., Bashan A., Bartels H., Agmon I., Franceschi F., Yonath A.
      Cell 102:615-623(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
    7. "The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit."
      Brodersen D.E., Clemons W.M. Jr., Carter A.P., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
      Cell 103:1143-1154(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
    8. "Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics."
      Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
      Nature 407:340-348(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 30S SUBUNIT.
    9. "The path of messenger RNA through the ribosome."
      Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
      Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
    10. "Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3."
      Pioletti M., Schluenzen F., Harms J., Zarivach R., Gluehmann M., Avila H., Bashan A., Bartels H., Auerbach T., Jacobi C., Hartsch T., Yonath A., Franceschi F.
      EMBO J. 20:1829-1839(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
    11. "Crystal structure of an initiation factor bound to the 30S ribosomal subunit."
      Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Hartsch T., Wimberly B.T., Ramakrishnan V.
      Science 291:498-501(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
    12. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME, INTERSUBUNIT BRIDGE FORMATION.
    13. "Recognition of cognate transfer RNA by the 30S ribosomal subunit."
      Ogle J.M., Brodersen D.E., Clemons W.M. Jr., Tarry M.J., Carter A.P., Ramakrishnan V.
      Science 292:897-902(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.11 ANGSTROMS) OF THE 30S SUBUNIT.
    14. "Crystal structure of the 30S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16S RNA."
      Brodersen D.E., Clemons W.M. Jr., Carter A.P., Wimberly B.T., Ramakrishnan V.
      J. Mol. Biol. 316:725-768(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.

    Entry informationi

    Entry nameiRS13_THET8
    AccessioniPrimary (citable) accession number: P80377
    Secondary accession number(s): Q5SHR3, Q9RA65
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1995
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 124 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3