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Protein

30S ribosomal protein S10

Gene

rpsJ

Organism
Thermus thermophilus
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the binding of tRNA to the ribosomes.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S10UniRule annotation
Gene namesi
Name:rpsJUniRule annotation
Synonyms:rps10UniRule annotation
OrganismiThermus thermophilus
Taxonomic identifieri274 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001466212 – 10530S ribosomal protein S10Add BLAST104

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1329.

Structurei

Secondary structure

1105
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 11Combined sources8
Helixi13 – 16Combined sources4
Turni18 – 20Combined sources3
Beta strandi21 – 23Combined sources3
Helixi24 – 26Combined sources3
Beta strandi28 – 32Combined sources5
Beta strandi46 – 49Combined sources4
Beta strandi51 – 54Combined sources4
Beta strandi61 – 64Combined sources4
Beta strandi71 – 76Combined sources6
Turni79 – 87Combined sources9
Beta strandi92 – 98Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1TWTmodel-M2-105[»]
4V8XX-ray3.35AJ/CJ1-105[»]
ProteinModelPortaliP80375.
SMRiP80375.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S10P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108Z10. Bacteria.
COG0051. LUCA.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10. 1 hit.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SMARTiSM01403. Ribosomal_S10. 1 hit.
[Graphical view]
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P80375-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKIRIKLRG FDHKTLDASA QKIVEAARRS GAQVSGPIPL PTRVRRFTVI
60 70 80 90 100
RGPFKHKDSR EHFELRTHNR LVDIINPNRK TIEQLMTLDL PTGVEIEIKT

VGGGR
Length:105
Mass (Da):11,930
Last modified:January 23, 2007 - v3
Checksum:iE769CB9EFE2C4EF4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z46265 Genomic DNA. Translation: CAA86407.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z46265 Genomic DNA. Translation: CAA86407.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1TWTmodel-M2-105[»]
4V8XX-ray3.35AJ/CJ1-105[»]
ProteinModelPortaliP80375.
SMRiP80375.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1329.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4108Z10. Bacteria.
COG0051. LUCA.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10. 1 hit.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SMARTiSM01403. Ribosomal_S10. 1 hit.
[Graphical view]
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS10_THETH
AccessioniPrimary (citable) accession number: P80375
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 99 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.