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P80374 (RS9_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 121. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
30S ribosomal protein S9
Gene names
Name:rpsI
Synonyms:rps9
Ordered Locus Names:TTHA1464
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length128 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Part of the top of the head of the 30S subunit. The C-terminal region penetrates the head emerging in the P-site where it contacts tRNA. HAMAP-Rule MF_00532_B

Subunit structure

Part of the 30S ribosomal subunit. Contacts proteins S7 and S10. Ref.4 Ref.5 Ref.6 Ref.7 Ref.9 Ref.10 Ref.12 Ref.13

Sequence similarities

Belongs to the ribosomal protein S9P family.

Mass spectrometry

Molecular mass is 14384 Da from positions 1 - 128. Determined by MALDI. Ref.3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 12812830S ribosomal protein S9 HAMAP-Rule MF_00532_B
PRO_0000111431

Secondary structure

............................ 128
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P80374 [UniParc].

Last modified May 10, 2005. Version 3.
Checksum: FA9A4ED2CC5D8CC1

FASTA12814,383
        10         20         30         40         50         60 
MEQYYGTGRR KEAVARVFLR PGNGKVTVNG QDFNEYFQGL VRAVAALEPL RAVDALGHFD 

        70         80         90        100        110        120 
AYITVRGGGK SGQIDAIKLG IARALVQYNP DYRAKLKPLG FLTRDARVVE RKKYGKHKAR 


RAPQYSKR 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"Purification and characterization of the 30S ribosomal proteins from the bacterium Thermus thermophilus."
Tsiboli P., Herfurth E., Choli T.
Eur. J. Biochem. 226:169-177(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-28.
[3]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[4]"Structure of the 30S ribosomal subunit."
Wimberly B.T., Brodersen D.E., Clemons W.M. Jr., Morgan-Warren R.J., Carter A.P., Vonrhein C., Hartsch T., Ramakrishnan V.
Nature 407:327-339(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.
[5]"Structure of functionally activated small ribosomal subunit at 3.3 A resolution."
Schluenzen F., Tocilj A., Zarivach R., Harms J., Gluehmann M., Janell D., Bashan A., Bartels H., Agmon I., Franceschi F., Yonath A.
Cell 102:615-623(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
[6]"The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit."
Brodersen D.E., Clemons W.M. Jr., Carter A.P., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
Cell 103:1143-1154(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
[7]"Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics."
Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
Nature 407:340-348(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 30S SUBUNIT.
[8]"The path of messenger RNA through the ribosome."
Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[9]"Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3."
Pioletti M., Schluenzen F., Harms J., Zarivach R., Gluehmann M., Avila H., Bashan A., Bartels H., Auerbach T., Jacobi C., Hartsch T., Yonath A., Franceschi F.
EMBO J. 20:1829-1839(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
[10]"Crystal structure of an initiation factor bound to the 30S ribosomal subunit."
Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Hartsch T., Wimberly B.T., Ramakrishnan V.
Science 291:498-501(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
[11]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
[12]"Recognition of cognate transfer RNA by the 30S ribosomal subunit."
Ogle J.M., Brodersen D.E., Clemons W.M. Jr., Tarry M.J., Carter A.P., Ramakrishnan V.
Science 292:897-902(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.11 ANGSTROMS) OF THE 30S SUBUNIT.
[13]"Crystal structure of the 30S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16S RNA."
Brodersen D.E., Clemons W.M. Jr., Carter A.P., Wimberly B.T., Ramakrishnan V.
J. Mol. Biol. 316:725-768(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP008226 Genomic DNA. Translation: BAD71287.1.
RefSeqYP_144730.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1FJGX-ray3.00I1-128[»]
1GIXX-ray5.50L1-128[»]
1HNWX-ray3.40I1-128[»]
1HNXX-ray3.40I1-128[»]
1HNZX-ray3.30I1-128[»]
1HR0X-ray3.20I1-128[»]
1I94X-ray3.20I1-128[»]
1I95X-ray4.50I1-128[»]
1I96X-ray4.20I1-128[»]
1I97X-ray4.50I1-128[»]
1IBKX-ray3.31I1-128[»]
1IBLX-ray3.11I1-128[»]
1IBMX-ray3.31I1-128[»]
1J5EX-ray3.05I1-128[»]
1JGOX-ray5.60L1-128[»]
1JGPX-ray7.00L1-128[»]
1JGQX-ray5.00L1-128[»]
1L1Umodel-I2-128[»]
1ML5electron microscopy14.00L1-128[»]
1N32X-ray3.00I1-128[»]
1N33X-ray3.35I1-128[»]
1N34X-ray3.80I1-128[»]
1N36X-ray3.65I1-128[»]
1PNSX-ray8.70I2-128[»]
1PNXX-ray9.50I2-128[»]
1XMOX-ray3.25I1-128[»]
1XMQX-ray3.00I1-128[»]
1XNQX-ray3.05I1-128[»]
1XNRX-ray3.10I1-128[»]
1YL4X-ray5.50L1-128[»]
2B64X-ray5.90I1-128[»]
2B9MX-ray6.76I1-128[»]
2B9OX-ray6.46I1-128[»]
2E5LX-ray3.30I1-128[»]
2F4VX-ray3.80I1-128[»]
2HGIX-ray5.00L1-128[»]
2HGPX-ray5.50L1-128[»]
2HGRX-ray4.51L1-128[»]
2HHHX-ray3.35I1-128[»]
2OW8X-ray3.71j1-128[»]
2UU9X-ray3.10I1-128[»]
2UUAX-ray2.90I1-128[»]
2UUBX-ray2.90I1-128[»]
2UUCX-ray3.10I1-128[»]
2WRIX-ray3.60I1-128[»]
2WRKX-ray3.60I1-128[»]
2WRNX-ray3.60I1-128[»]
2WRQX-ray3.60I1-128[»]
2X9RX-ray3.10I1-128[»]
2X9TX-ray3.10I1-128[»]
2XFZX-ray3.20I1-128[»]
2XG1X-ray3.20I1-128[»]
2XQDX-ray3.10I1-128[»]
2XSYelectron microscopy7.80I1-128[»]
2XUYelectron microscopy7.60I1-128[»]
2Y0UX-ray3.10I1-128[»]
2Y0WX-ray3.10I1-128[»]
2Y0YX-ray3.10I1-128[»]
2Y10X-ray3.10I1-128[»]
2Y12X-ray3.10I1-128[»]
2Y14X-ray3.10I1-128[»]
2Y16X-ray3.10I1-128[»]
2Y18X-ray3.10I1-128[»]
2ZM6X-ray3.30I1-128[»]
3FICelectron microscopy6.40I2-128[»]
3HUWX-ray3.10I1-128[»]
3HUYX-ray3.10I1-128[»]
3I8GX-ray3.10L1-128[»]
3I8HX-ray3.10L1-128[»]
3I9BX-ray3.50L1-128[»]
3I9DX-ray3.50L1-128[»]
3KIQX-ray3.30i1-128[»]
3KISX-ray3.30i1-128[»]
3KIUX-ray3.60i1-128[»]
3KIXX-ray3.60i1-128[»]
3KNHX-ray3.00I1-128[»]
3KNJX-ray3.15I1-128[»]
3KNLX-ray3.45I1-128[»]
3KNNX-ray3.45I1-128[»]
3OGEX-ray3.00I1-128[»]
3OGYX-ray3.00I1-128[»]
3OHCX-ray3.00I1-128[»]
3OHDX-ray3.00I1-128[»]
3OHYX-ray3.00I1-128[»]
3OI0X-ray3.00I1-128[»]
3OI2X-ray3.10I1-128[»]
3OI4X-ray3.10I1-128[»]
3OTOX-ray3.69I1-128[»]
3TVFX-ray3.10L1-128[»]
3TVGX-ray3.10L1-128[»]
3UXSX-ray3.20I1-128[»]
3UXTX-ray3.20I1-128[»]
3UYDX-ray3.00L1-128[»]
3UYFX-ray3.00L1-128[»]
3UZ3X-ray3.30L1-128[»]
3UZ4X-ray3.30L1-128[»]
3UZ6X-ray3.00L1-128[»]
3UZ7X-ray3.00L1-128[»]
3UZGX-ray3.30L1-128[»]
3UZIX-ray3.30L1-128[»]
3UZLX-ray3.30L1-128[»]
3UZMX-ray3.30L1-128[»]
3V22X-ray3.00I1-128[»]
3V24X-ray3.00I1-128[»]
3V26X-ray3.10I1-128[»]
3V28X-ray3.10I1-128[»]
3V2CX-ray2.70I1-128[»]
3V2EX-ray2.70I1-128[»]
3V6UX-ray3.90I1-128[»]
3V6VX-ray3.90I1-128[»]
3ZN7X-ray3.10I1-128[»]
3ZNDX-ray3.10I1-128[»]
3ZVOX-ray3.80I1-128[»]
4ABRX-ray3.10I1-128[»]
4AQYX-ray3.50I1-128[»]
4B3MX-ray2.90I1-128[»]
4B3RX-ray3.00I1-128[»]
4B3SX-ray3.15I1-128[»]
4B3TX-ray3.00I1-128[»]
4B8FX-ray3.70I1-128[»]
4B8HX-ray3.70I1-128[»]
4BTCX-ray2.95I1-128[»]
4BYBX-ray3.35I1-128[»]
4BYDX-ray3.35I1-128[»]
4DH9X-ray3.20I1-128[»]
4DHBX-ray3.20I1-128[»]
4DR1X-ray3.60I1-128[»]
4DR2X-ray3.25I1-128[»]
4DR3X-ray3.35I1-128[»]
4DR4X-ray3.97I1-128[»]
4DR5X-ray3.45I1-128[»]
4DR6X-ray3.30I1-128[»]
4DR7X-ray3.75I1-128[»]
4DUYX-ray3.39I1-128[»]
4DUZX-ray3.65I1-128[»]
4DV0X-ray3.85I1-128[»]
4DV1X-ray3.85I1-128[»]
4DV2X-ray3.65I1-128[»]
4DV3X-ray3.55I1-128[»]
4DV4X-ray3.65I1-128[»]
4DV5X-ray3.68I1-128[»]
4DV6X-ray3.30I1-128[»]
4DV7X-ray3.29I1-128[»]
4EJ9X-ray3.52I1-128[»]
4EJAX-ray3.52I1-128[»]
4G5KX-ray3.30L1-128[»]
4G5MX-ray3.30L1-128[»]
4G5TX-ray3.10L1-128[»]
4G5VX-ray3.10L1-128[»]
4GKJX-ray3.30I2-128[»]
4GKKX-ray3.20I2-128[»]
4JI0X-ray3.49I1-128[»]
4JI1X-ray3.14I1-128[»]
4JI2X-ray3.64I1-128[»]
4JI3X-ray3.35I1-128[»]
4JI4X-ray3.69I1-128[»]
4JI5X-ray3.85I1-128[»]
4JI6X-ray3.55I1-128[»]
4JI7X-ray3.50I1-128[»]
4JI8X-ray3.74I1-128[»]
4JUWX-ray2.86I2-128[»]
4JV5X-ray3.16I2-128[»]
4JYAX-ray3.10I2-128[»]
4K0KX-ray3.40I2-128[»]
4K0LX-ray3.30I2-128[»]
4K0PX-ray3.30I2-128[»]
4KHPX-ray3.10I2-128[»]
ProteinModelPortalP80374.
SMRP80374. Positions 2-128.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING300852.TTHA1464.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD71287; BAD71287; BAD71287.
GeneID3169752.
KEGGttj:TTHA1464.
PATRIC23957885. VBITheThe93045_1438.

Phylogenomic databases

eggNOGCOG0103.
HOGENOMHOG000019802.
KOK02996.
OMAIKQGAAR.
OrthoDBEOG6MWNH0.
ProtClustDBPRK00132.

Enzyme and pathway databases

BioCycTTHE300852:GH8R-1500-MONOMER.

Family and domain databases

Gene3D3.30.230.10. 1 hit.
HAMAPMF_00532_B. Ribosomal_S9_B.
InterProIPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR000754. Ribosomal_S9.
IPR023035. Ribosomal_S9_bac/plastid.
IPR020574. Ribosomal_S9_CS.
[Graphical view]
PANTHERPTHR21569. PTHR21569. 1 hit.
PfamPF00380. Ribosomal_S9. 1 hit.
[Graphical view]
SUPFAMSSF54211. SSF54211. 1 hit.
PROSITEPS00360. RIBOSOMAL_S9. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP80374.

Entry information

Entry nameRS9_THET8
AccessionPrimary (citable) accession number: P80374
Secondary accession number(s): Q5SIB0, Q9ACJ9
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: May 10, 2005
Last modified: February 19, 2014
This is version 121 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references