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P80373

- RS4_THET8

UniProt

P80373 - RS4_THET8

Protein

30S ribosomal protein S4

Gene

rpsD

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 129 (01 Oct 2014)
      Sequence version 3 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the body and platform of the 30S subunit. Binds mRNA in the 70S ribosome, positioning it for translation.

    Cofactori

    Binds 1 zinc ion per subunit.Curated

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi9 – 91ZincCurated
    Metal bindingi12 – 121ZincCurated
    Metal bindingi26 – 261ZincCurated
    Metal bindingi31 – 311ZincCurated

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri9 – 3123C4-typeAdd
    BLAST

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. rRNA binding Source: UniProtKB-HAMAP
    3. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    Metal-binding, RNA-binding, rRNA-binding, Zinc

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-1704-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S4
    Gene namesi
    Name:rpsD
    Synonyms:rps4
    Ordered Locus Names:TTHA1665
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. small ribosomal subunit Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed1 Publication
    Chaini2 – 20920830S ribosomal protein S4PRO_0000132483Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.

    Protein-protein interaction databases

    STRINGi300852.TTHA1665.

    Structurei

    Secondary structure

    1
    209
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi9 – 157
    Beta strandi21 – 233
    Beta strandi26 – 283
    Helixi33 – 353
    Turni42 – 454
    Helixi53 – 6816
    Helixi72 – 8413
    Beta strandi85 – 873
    Helixi89 – 9810
    Helixi101 – 1077
    Beta strandi110 – 1134
    Helixi114 – 1229
    Turni123 – 1253
    Beta strandi126 – 1283
    Beta strandi129 – 1313
    Beta strandi145 – 1484
    Helixi150 – 1523
    Beta strandi153 – 1553
    Helixi156 – 1649
    Turni165 – 1673
    Beta strandi174 – 1763
    Turni178 – 1814
    Beta strandi182 – 1843
    Helixi191 – 1933
    Helixi200 – 2067

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1FJGX-ray3.00D1-209[»]
    1FKAX-ray3.30D1-209[»]
    1GIXX-ray5.50G1-209[»]
    1HNWX-ray3.40D1-209[»]
    1HNXX-ray3.40D1-209[»]
    1HNZX-ray3.30D1-209[»]
    1HR0X-ray3.20D1-209[»]
    1I94X-ray3.20D2-209[»]
    1I95X-ray4.50D2-209[»]
    1I96X-ray4.20D2-209[»]
    1I97X-ray4.50D2-209[»]
    1IBKX-ray3.31D1-209[»]
    1IBLX-ray3.11D1-209[»]
    1IBMX-ray3.31D1-209[»]
    1J5EX-ray3.05D2-209[»]
    1JGOX-ray5.60G1-209[»]
    1JGPX-ray7.00G1-209[»]
    1JGQX-ray5.00G1-209[»]
    1L1Umodel-D1-209[»]
    1ML5electron microscopy14.00G1-209[»]
    1N32X-ray3.00D2-209[»]
    1N33X-ray3.35D2-209[»]
    1N34X-ray3.80D2-209[»]
    1N36X-ray3.65D2-209[»]
    1PNSX-ray8.70D2-209[»]
    1PNXX-ray9.50D2-209[»]
    1QD7X-ray5.50C60-155[»]
    1TWTmodel-G2-209[»]
    1XMOX-ray3.25D1-209[»]
    1XMQX-ray3.00D1-209[»]
    1XNQX-ray3.05D1-209[»]
    1XNRX-ray3.10D1-209[»]
    1YL4X-ray5.50G1-209[»]
    2B64X-ray5.90D1-209[»]
    2B9MX-ray6.76D1-209[»]
    2B9OX-ray6.46D1-209[»]
    2E5LX-ray3.30D2-209[»]
    2F4VX-ray3.80D1-209[»]
    2HGIX-ray5.00G1-209[»]
    2HGPX-ray5.50G1-209[»]
    2HGRX-ray4.51G1-209[»]
    2HHHX-ray3.35D1-209[»]
    2J00X-ray2.80D2-209[»]
    2J02X-ray2.80D2-209[»]
    2OW8X-ray3.71e1-209[»]
    2UU9X-ray3.10D2-209[»]
    2UUAX-ray2.90D2-209[»]
    2UUBX-ray2.80D2-209[»]
    2UUCX-ray3.10D2-209[»]
    2UXBX-ray3.10D2-209[»]
    2UXCX-ray2.90D2-209[»]
    2UXDX-ray3.20D2-209[»]
    2V46X-ray3.50D2-209[»]
    2V48X-ray3.50D2-209[»]
    2VQEX-ray2.50D1-209[»]
    2VQFX-ray2.90D1-209[»]
    2WDGX-ray3.30D1-209[»]
    2WDHX-ray3.30D1-209[»]
    2WDKX-ray3.50D1-209[»]
    2WDMX-ray3.50D1-209[»]
    2WH1X-ray3.45D1-209[»]
    2WH3X-ray3.45D1-209[»]
    2WRIX-ray3.60D1-209[»]
    2WRKX-ray3.60D1-209[»]
    2WRNX-ray3.60D1-209[»]
    2WRQX-ray3.60D1-209[»]
    2X9RX-ray3.10D1-209[»]
    2X9TX-ray3.10D1-209[»]
    2XFZX-ray3.20D1-209[»]
    2XG1X-ray3.20D1-209[»]
    2XQDX-ray3.10D1-209[»]
    2XSYelectron microscopy7.80D1-209[»]
    2XUYelectron microscopy7.60D1-209[»]
    2Y0UX-ray3.10D1-209[»]
    2Y0WX-ray3.10D1-209[»]
    2Y0YX-ray3.10D1-209[»]
    2Y10X-ray3.10D1-209[»]
    2Y12X-ray3.10D1-209[»]
    2Y14X-ray3.10D1-209[»]
    2Y16X-ray3.10D1-209[»]
    2Y18X-ray3.10D1-209[»]
    2ZKQelectron microscopy8.70d1-209[»]
    2ZM6X-ray3.30D2-209[»]
    3FICelectron microscopy6.40D2-209[»]
    3HUWX-ray3.10D1-209[»]
    3HUYX-ray3.10D1-209[»]
    3I8GX-ray3.10G1-209[»]
    3I8HX-ray3.10G1-209[»]
    3I9BX-ray3.50G1-209[»]
    3I9DX-ray3.50G1-209[»]
    3KIQX-ray3.30d1-209[»]
    3KISX-ray3.30d1-209[»]
    3KIUX-ray3.60d1-209[»]
    3KIXX-ray3.60d1-209[»]
    3KNHX-ray3.00D1-209[»]
    3KNJX-ray3.15D1-209[»]
    3KNLX-ray3.45D1-209[»]
    3KNNX-ray3.45D1-209[»]
    3OGEX-ray3.00D1-209[»]
    3OGYX-ray3.00D1-209[»]
    3OHCX-ray3.00D1-209[»]
    3OHDX-ray3.00D1-209[»]
    3OHYX-ray3.00D1-209[»]
    3OI0X-ray3.00D1-209[»]
    3OI2X-ray3.10D1-209[»]
    3OI4X-ray3.10D1-209[»]
    3OTOX-ray3.69D1-209[»]
    3T1HX-ray3.11D1-209[»]
    3T1YX-ray2.80D1-209[»]
    3TVFX-ray3.10G2-209[»]
    3TVGX-ray3.10G2-209[»]
    3UXSX-ray3.20D1-209[»]
    3UXTX-ray3.20D1-209[»]
    3UYDX-ray3.00G2-209[»]
    3UYFX-ray3.00G2-209[»]
    3UZ3X-ray3.30G2-209[»]
    3UZ4X-ray3.30G2-209[»]
    3UZ6X-ray3.00G2-209[»]
    3UZ7X-ray3.00G2-209[»]
    3UZGX-ray3.30G2-209[»]
    3UZIX-ray3.30G2-209[»]
    3UZLX-ray3.30G2-209[»]
    3UZMX-ray3.30G2-209[»]
    3V22X-ray3.00D1-209[»]
    3V24X-ray3.00D1-209[»]
    3V26X-ray3.10D1-209[»]
    3V28X-ray3.10D1-209[»]
    3V2CX-ray2.70D1-209[»]
    3V2EX-ray2.70D1-209[»]
    3V6UX-ray3.90D1-209[»]
    3V6VX-ray3.90D1-209[»]
    3ZN7X-ray3.10D1-209[»]
    3ZNDX-ray3.10D1-209[»]
    3ZVOX-ray3.80D1-209[»]
    4ABRX-ray3.10D1-209[»]
    4AQYX-ray3.50D2-209[»]
    4B3MX-ray2.90D2-209[»]
    4B3RX-ray3.00D2-209[»]
    4B3SX-ray3.15D2-209[»]
    4B3TX-ray3.00D2-209[»]
    4B8FX-ray3.70D1-209[»]
    4B8HX-ray3.70D1-209[»]
    4BYBX-ray3.35D1-209[»]
    4BYDX-ray3.35D1-209[»]
    4CR1X-ray2.95D1-209[»]
    4DH9X-ray3.20D1-209[»]
    4DHBX-ray3.20D1-209[»]
    4DR1X-ray3.60D1-209[»]
    4DR2X-ray3.25D1-209[»]
    4DR3X-ray3.35D1-209[»]
    4DR4X-ray3.97D1-209[»]
    4DR5X-ray3.45D1-209[»]
    4DR6X-ray3.30D1-209[»]
    4DR7X-ray3.75D1-209[»]
    4DUYX-ray3.39D1-209[»]
    4DUZX-ray3.65D1-209[»]
    4DV0X-ray3.85D1-209[»]
    4DV1X-ray3.85D1-209[»]
    4DV2X-ray3.65D1-209[»]
    4DV3X-ray3.55D1-209[»]
    4DV4X-ray3.65D1-209[»]
    4DV5X-ray3.68D1-209[»]
    4DV6X-ray3.30D1-209[»]
    4DV7X-ray3.29D1-209[»]
    4EJ9X-ray3.52D1-209[»]
    4EJAX-ray3.52D1-209[»]
    4G5KX-ray3.30G2-209[»]
    4G5MX-ray3.30G2-209[»]
    4G5TX-ray3.10G2-209[»]
    4G5VX-ray3.10G2-209[»]
    4GKJX-ray3.30D2-209[»]
    4GKKX-ray3.20D2-209[»]
    4JI0X-ray3.49D1-209[»]
    4JI1X-ray3.14D1-209[»]
    4JI2X-ray3.64D1-209[»]
    4JI3X-ray3.35D1-209[»]
    4JI4X-ray3.69D1-209[»]
    4JI5X-ray3.85D1-209[»]
    4JI6X-ray3.55D1-209[»]
    4JI7X-ray3.50D1-209[»]
    4JI8X-ray3.74D1-209[»]
    4JUWX-ray2.86D2-209[»]
    4JV5X-ray3.16D2-209[»]
    4JYAX-ray3.10D2-209[»]
    4K0KX-ray3.40D2-209[»]
    4K0LX-ray3.30D2-209[»]
    4K0PX-ray3.30D2-209[»]
    4KHPX-ray3.10D2-209[»]
    4NVUX-ray3.00D1-209[»]
    4NVWX-ray3.00D1-209[»]
    4NVYX-ray3.10D1-209[»]
    4NW0X-ray3.10D1-209[»]
    4NXMX-ray3.65D1-209[»]
    4NXNX-ray3.54D1-209[»]
    4OX9X-ray3.80D2-209[»]
    ProteinModelPortaliP80373.
    SMRiP80373. Positions 2-209.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP80373.

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini99 – 16163S4 RNA-bindingAdd
    BLAST

    Sequence similaritiesi

    Belongs to the ribosomal protein S4P family.Curated
    Contains 1 S4 RNA-binding domain.Curated

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri9 – 3123C4-typeAdd
    BLAST

    Keywords - Domaini

    Zinc-finger

    Phylogenomic databases

    eggNOGiCOG0522.
    HOGENOMiHOG000221004.
    KOiK02986.
    OMAiTCKLSRR.
    OrthoDBiEOG6N3CXM.
    PhylomeDBiP80373.

    Family and domain databases

    Gene3Di1.10.1050.10. 1 hit.
    3.10.290.10. 1 hit.
    HAMAPiMF_01306_B. Ribosomal_S4_B.
    InterProiIPR022801. Ribosomal_S4/S9.
    IPR001912. Ribosomal_S4/S9_N.
    IPR005709. Ribosomal_S4_bac-type.
    IPR018079. Ribosomal_S4_CS.
    IPR002942. S4_RNA-bd.
    [Graphical view]
    PANTHERiPTHR11831. PTHR11831. 1 hit.
    PfamiPF00163. Ribosomal_S4. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view]
    SMARTiSM00363. S4. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR01017. rpsD_bact. 1 hit.
    PROSITEiPS00632. RIBOSOMAL_S4. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P80373-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGRYIGPVCR LCRREGVKLY LKGERCYSPK CAMERRPYPP GQHGQKRARR    50
    PSDYAVRLRE KQKLRRIYGI SERQFRNLFE EASKKKGVTG SVFLGLLESR 100
    LDNVVYRLGF AVSRRQARQL VRHGHITVNG RRVDLPSYRV RPGDEIAVAE 150
    KSRNLELIRQ NLEAMKGRKV GPWLSLDVEG MKGKFLRLPD REDLALPVNE 200
    QLVIEFYSR 209
    Length:209
    Mass (Da):24,324
    Last modified:January 23, 2007 - v3
    Checksum:i0FF3911816971236
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti12 – 121C → S AA sequence (PubMed:7957245)Curated
    Sequence conflicti26 – 261C → D AA sequence (PubMed:7957245)Curated

    Mass spectrometryi

    Molecular mass is 24192 Da from positions 2 - 209. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB024328 Genomic DNA. Translation: BAA75548.1.
    AP008226 Genomic DNA. Translation: BAD71488.1.
    RefSeqiWP_011173699.1. NC_006461.1.
    YP_144931.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD71488; BAD71488; BAD71488.
    GeneIDi3168006.
    KEGGittj:TTHA1665.
    PATRICi23958285. VBITheThe93045_1635.

    Cross-referencesi

    Web resourcesi

    T.thermophilus ribosome structure and function

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB024328 Genomic DNA. Translation: BAA75548.1 .
    AP008226 Genomic DNA. Translation: BAD71488.1 .
    RefSeqi WP_011173699.1. NC_006461.1.
    YP_144931.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1FJG X-ray 3.00 D 1-209 [» ]
    1FKA X-ray 3.30 D 1-209 [» ]
    1GIX X-ray 5.50 G 1-209 [» ]
    1HNW X-ray 3.40 D 1-209 [» ]
    1HNX X-ray 3.40 D 1-209 [» ]
    1HNZ X-ray 3.30 D 1-209 [» ]
    1HR0 X-ray 3.20 D 1-209 [» ]
    1I94 X-ray 3.20 D 2-209 [» ]
    1I95 X-ray 4.50 D 2-209 [» ]
    1I96 X-ray 4.20 D 2-209 [» ]
    1I97 X-ray 4.50 D 2-209 [» ]
    1IBK X-ray 3.31 D 1-209 [» ]
    1IBL X-ray 3.11 D 1-209 [» ]
    1IBM X-ray 3.31 D 1-209 [» ]
    1J5E X-ray 3.05 D 2-209 [» ]
    1JGO X-ray 5.60 G 1-209 [» ]
    1JGP X-ray 7.00 G 1-209 [» ]
    1JGQ X-ray 5.00 G 1-209 [» ]
    1L1U model - D 1-209 [» ]
    1ML5 electron microscopy 14.00 G 1-209 [» ]
    1N32 X-ray 3.00 D 2-209 [» ]
    1N33 X-ray 3.35 D 2-209 [» ]
    1N34 X-ray 3.80 D 2-209 [» ]
    1N36 X-ray 3.65 D 2-209 [» ]
    1PNS X-ray 8.70 D 2-209 [» ]
    1PNX X-ray 9.50 D 2-209 [» ]
    1QD7 X-ray 5.50 C 60-155 [» ]
    1TWT model - G 2-209 [» ]
    1XMO X-ray 3.25 D 1-209 [» ]
    1XMQ X-ray 3.00 D 1-209 [» ]
    1XNQ X-ray 3.05 D 1-209 [» ]
    1XNR X-ray 3.10 D 1-209 [» ]
    1YL4 X-ray 5.50 G 1-209 [» ]
    2B64 X-ray 5.90 D 1-209 [» ]
    2B9M X-ray 6.76 D 1-209 [» ]
    2B9O X-ray 6.46 D 1-209 [» ]
    2E5L X-ray 3.30 D 2-209 [» ]
    2F4V X-ray 3.80 D 1-209 [» ]
    2HGI X-ray 5.00 G 1-209 [» ]
    2HGP X-ray 5.50 G 1-209 [» ]
    2HGR X-ray 4.51 G 1-209 [» ]
    2HHH X-ray 3.35 D 1-209 [» ]
    2J00 X-ray 2.80 D 2-209 [» ]
    2J02 X-ray 2.80 D 2-209 [» ]
    2OW8 X-ray 3.71 e 1-209 [» ]
    2UU9 X-ray 3.10 D 2-209 [» ]
    2UUA X-ray 2.90 D 2-209 [» ]
    2UUB X-ray 2.80 D 2-209 [» ]
    2UUC X-ray 3.10 D 2-209 [» ]
    2UXB X-ray 3.10 D 2-209 [» ]
    2UXC X-ray 2.90 D 2-209 [» ]
    2UXD X-ray 3.20 D 2-209 [» ]
    2V46 X-ray 3.50 D 2-209 [» ]
    2V48 X-ray 3.50 D 2-209 [» ]
    2VQE X-ray 2.50 D 1-209 [» ]
    2VQF X-ray 2.90 D 1-209 [» ]
    2WDG X-ray 3.30 D 1-209 [» ]
    2WDH X-ray 3.30 D 1-209 [» ]
    2WDK X-ray 3.50 D 1-209 [» ]
    2WDM X-ray 3.50 D 1-209 [» ]
    2WH1 X-ray 3.45 D 1-209 [» ]
    2WH3 X-ray 3.45 D 1-209 [» ]
    2WRI X-ray 3.60 D 1-209 [» ]
    2WRK X-ray 3.60 D 1-209 [» ]
    2WRN X-ray 3.60 D 1-209 [» ]
    2WRQ X-ray 3.60 D 1-209 [» ]
    2X9R X-ray 3.10 D 1-209 [» ]
    2X9T X-ray 3.10 D 1-209 [» ]
    2XFZ X-ray 3.20 D 1-209 [» ]
    2XG1 X-ray 3.20 D 1-209 [» ]
    2XQD X-ray 3.10 D 1-209 [» ]
    2XSY electron microscopy 7.80 D 1-209 [» ]
    2XUY electron microscopy 7.60 D 1-209 [» ]
    2Y0U X-ray 3.10 D 1-209 [» ]
    2Y0W X-ray 3.10 D 1-209 [» ]
    2Y0Y X-ray 3.10 D 1-209 [» ]
    2Y10 X-ray 3.10 D 1-209 [» ]
    2Y12 X-ray 3.10 D 1-209 [» ]
    2Y14 X-ray 3.10 D 1-209 [» ]
    2Y16 X-ray 3.10 D 1-209 [» ]
    2Y18 X-ray 3.10 D 1-209 [» ]
    2ZKQ electron microscopy 8.70 d 1-209 [» ]
    2ZM6 X-ray 3.30 D 2-209 [» ]
    3FIC electron microscopy 6.40 D 2-209 [» ]
    3HUW X-ray 3.10 D 1-209 [» ]
    3HUY X-ray 3.10 D 1-209 [» ]
    3I8G X-ray 3.10 G 1-209 [» ]
    3I8H X-ray 3.10 G 1-209 [» ]
    3I9B X-ray 3.50 G 1-209 [» ]
    3I9D X-ray 3.50 G 1-209 [» ]
    3KIQ X-ray 3.30 d 1-209 [» ]
    3KIS X-ray 3.30 d 1-209 [» ]
    3KIU X-ray 3.60 d 1-209 [» ]
    3KIX X-ray 3.60 d 1-209 [» ]
    3KNH X-ray 3.00 D 1-209 [» ]
    3KNJ X-ray 3.15 D 1-209 [» ]
    3KNL X-ray 3.45 D 1-209 [» ]
    3KNN X-ray 3.45 D 1-209 [» ]
    3OGE X-ray 3.00 D 1-209 [» ]
    3OGY X-ray 3.00 D 1-209 [» ]
    3OHC X-ray 3.00 D 1-209 [» ]
    3OHD X-ray 3.00 D 1-209 [» ]
    3OHY X-ray 3.00 D 1-209 [» ]
    3OI0 X-ray 3.00 D 1-209 [» ]
    3OI2 X-ray 3.10 D 1-209 [» ]
    3OI4 X-ray 3.10 D 1-209 [» ]
    3OTO X-ray 3.69 D 1-209 [» ]
    3T1H X-ray 3.11 D 1-209 [» ]
    3T1Y X-ray 2.80 D 1-209 [» ]
    3TVF X-ray 3.10 G 2-209 [» ]
    3TVG X-ray 3.10 G 2-209 [» ]
    3UXS X-ray 3.20 D 1-209 [» ]
    3UXT X-ray 3.20 D 1-209 [» ]
    3UYD X-ray 3.00 G 2-209 [» ]
    3UYF X-ray 3.00 G 2-209 [» ]
    3UZ3 X-ray 3.30 G 2-209 [» ]
    3UZ4 X-ray 3.30 G 2-209 [» ]
    3UZ6 X-ray 3.00 G 2-209 [» ]
    3UZ7 X-ray 3.00 G 2-209 [» ]
    3UZG X-ray 3.30 G 2-209 [» ]
    3UZI X-ray 3.30 G 2-209 [» ]
    3UZL X-ray 3.30 G 2-209 [» ]
    3UZM X-ray 3.30 G 2-209 [» ]
    3V22 X-ray 3.00 D 1-209 [» ]
    3V24 X-ray 3.00 D 1-209 [» ]
    3V26 X-ray 3.10 D 1-209 [» ]
    3V28 X-ray 3.10 D 1-209 [» ]
    3V2C X-ray 2.70 D 1-209 [» ]
    3V2E X-ray 2.70 D 1-209 [» ]
    3V6U X-ray 3.90 D 1-209 [» ]
    3V6V X-ray 3.90 D 1-209 [» ]
    3ZN7 X-ray 3.10 D 1-209 [» ]
    3ZND X-ray 3.10 D 1-209 [» ]
    3ZVO X-ray 3.80 D 1-209 [» ]
    4ABR X-ray 3.10 D 1-209 [» ]
    4AQY X-ray 3.50 D 2-209 [» ]
    4B3M X-ray 2.90 D 2-209 [» ]
    4B3R X-ray 3.00 D 2-209 [» ]
    4B3S X-ray 3.15 D 2-209 [» ]
    4B3T X-ray 3.00 D 2-209 [» ]
    4B8F X-ray 3.70 D 1-209 [» ]
    4B8H X-ray 3.70 D 1-209 [» ]
    4BYB X-ray 3.35 D 1-209 [» ]
    4BYD X-ray 3.35 D 1-209 [» ]
    4CR1 X-ray 2.95 D 1-209 [» ]
    4DH9 X-ray 3.20 D 1-209 [» ]
    4DHB X-ray 3.20 D 1-209 [» ]
    4DR1 X-ray 3.60 D 1-209 [» ]
    4DR2 X-ray 3.25 D 1-209 [» ]
    4DR3 X-ray 3.35 D 1-209 [» ]
    4DR4 X-ray 3.97 D 1-209 [» ]
    4DR5 X-ray 3.45 D 1-209 [» ]
    4DR6 X-ray 3.30 D 1-209 [» ]
    4DR7 X-ray 3.75 D 1-209 [» ]
    4DUY X-ray 3.39 D 1-209 [» ]
    4DUZ X-ray 3.65 D 1-209 [» ]
    4DV0 X-ray 3.85 D 1-209 [» ]
    4DV1 X-ray 3.85 D 1-209 [» ]
    4DV2 X-ray 3.65 D 1-209 [» ]
    4DV3 X-ray 3.55 D 1-209 [» ]
    4DV4 X-ray 3.65 D 1-209 [» ]
    4DV5 X-ray 3.68 D 1-209 [» ]
    4DV6 X-ray 3.30 D 1-209 [» ]
    4DV7 X-ray 3.29 D 1-209 [» ]
    4EJ9 X-ray 3.52 D 1-209 [» ]
    4EJA X-ray 3.52 D 1-209 [» ]
    4G5K X-ray 3.30 G 2-209 [» ]
    4G5M X-ray 3.30 G 2-209 [» ]
    4G5T X-ray 3.10 G 2-209 [» ]
    4G5V X-ray 3.10 G 2-209 [» ]
    4GKJ X-ray 3.30 D 2-209 [» ]
    4GKK X-ray 3.20 D 2-209 [» ]
    4JI0 X-ray 3.49 D 1-209 [» ]
    4JI1 X-ray 3.14 D 1-209 [» ]
    4JI2 X-ray 3.64 D 1-209 [» ]
    4JI3 X-ray 3.35 D 1-209 [» ]
    4JI4 X-ray 3.69 D 1-209 [» ]
    4JI5 X-ray 3.85 D 1-209 [» ]
    4JI6 X-ray 3.55 D 1-209 [» ]
    4JI7 X-ray 3.50 D 1-209 [» ]
    4JI8 X-ray 3.74 D 1-209 [» ]
    4JUW X-ray 2.86 D 2-209 [» ]
    4JV5 X-ray 3.16 D 2-209 [» ]
    4JYA X-ray 3.10 D 2-209 [» ]
    4K0K X-ray 3.40 D 2-209 [» ]
    4K0L X-ray 3.30 D 2-209 [» ]
    4K0P X-ray 3.30 D 2-209 [» ]
    4KHP X-ray 3.10 D 2-209 [» ]
    4NVU X-ray 3.00 D 1-209 [» ]
    4NVW X-ray 3.00 D 1-209 [» ]
    4NVY X-ray 3.10 D 1-209 [» ]
    4NW0 X-ray 3.10 D 1-209 [» ]
    4NXM X-ray 3.65 D 1-209 [» ]
    4NXN X-ray 3.54 D 1-209 [» ]
    4OX9 X-ray 3.80 D 2-209 [» ]
    ProteinModelPortali P80373.
    SMRi P80373. Positions 2-209.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA1665.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD71488 ; BAD71488 ; BAD71488 .
    GeneIDi 3168006.
    KEGGi ttj:TTHA1665.
    PATRICi 23958285. VBITheThe93045_1635.

    Phylogenomic databases

    eggNOGi COG0522.
    HOGENOMi HOG000221004.
    KOi K02986.
    OMAi TCKLSRR.
    OrthoDBi EOG6N3CXM.
    PhylomeDBi P80373.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-1704-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P80373.

    Family and domain databases

    Gene3Di 1.10.1050.10. 1 hit.
    3.10.290.10. 1 hit.
    HAMAPi MF_01306_B. Ribosomal_S4_B.
    InterProi IPR022801. Ribosomal_S4/S9.
    IPR001912. Ribosomal_S4/S9_N.
    IPR005709. Ribosomal_S4_bac-type.
    IPR018079. Ribosomal_S4_CS.
    IPR002942. S4_RNA-bd.
    [Graphical view ]
    PANTHERi PTHR11831. PTHR11831. 1 hit.
    Pfami PF00163. Ribosomal_S4. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view ]
    SMARTi SM00363. S4. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR01017. rpsD_bact. 1 hit.
    PROSITEi PS00632. RIBOSOMAL_S4. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Cloning of the RNA polymerase alpha subunit gene from Thermus thermophilus HB8 and characterization of the protein."
      Wada T., Yamazaki T., Kuramitsu S., Kyogoku Y.
      J. Biochem. 125:143-150(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    3. "Purification and characterization of the 30S ribosomal proteins from the bacterium Thermus thermophilus."
      Tsiboli P., Herfurth E., Choli T.
      Eur. J. Biochem. 226:169-177(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-27.
    4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.
    5. "Structure of a bacterial 30S ribosomal subunit at 5.5 A resolution."
      Clemons W.M. Jr., May J.L.C., Wimberly B.T., McCutcheon J.P., Capel M.S., Ramakrishnan V.
      Nature 400:833-840(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE 30S SUBUNIT.
    6. Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.
    7. "Structure of functionally activated small ribosomal subunit at 3.3 A resolution."
      Schluenzen F., Tocilj A., Zarivach R., Harms J., Gluehmann M., Janell D., Bashan A., Bartels H., Agmon I., Franceschi F., Yonath A.
      Cell 102:615-623(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
    8. "The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit."
      Brodersen D.E., Clemons W.M. Jr., Carter A.P., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
      Cell 103:1143-1154(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
    9. "Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics."
      Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
      Nature 407:340-348(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 30S SUBUNIT.
    10. "The path of messenger RNA through the ribosome."
      Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
      Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
    11. "Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3."
      Pioletti M., Schluenzen F., Harms J., Zarivach R., Gluehmann M., Avila H., Bashan A., Bartels H., Auerbach T., Jacobi C., Hartsch T., Yonath A., Franceschi F.
      EMBO J. 20:1829-1839(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
    12. "Crystal structure of an initiation factor bound to the 30S ribosomal subunit."
      Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Hartsch T., Wimberly B.T., Ramakrishnan V.
      Science 291:498-501(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
    13. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
    14. "Recognition of cognate transfer RNA by the 30S ribosomal subunit."
      Ogle J.M., Brodersen D.E., Clemons W.M. Jr., Tarry M.J., Carter A.P., Ramakrishnan V.
      Science 292:897-902(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.11 ANGSTROMS) OF THE 30S SUBUNIT.
    15. "Crystal structure of the 30S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16S RNA."
      Brodersen D.E., Clemons W.M. Jr., Carter A.P., Wimberly B.T., Ramakrishnan V.
      J. Mol. Biol. 316:725-768(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.

    Entry informationi

    Entry nameiRS4_THET8
    AccessioniPrimary (citable) accession number: P80373
    Secondary accession number(s): Q5SHR5, Q9Z9H7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1995
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 129 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3